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Accelerating large scale protein structure alignments with graphics processing units

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Figure

Figure 1 Framework of ppsAlign. The framework consists of both GPU- and CPU- based processes
Figure 2 Algorithm of fragment-level alignmentalignment consists of three GPU kernels
Figure 3 GPU global memory layout of fragment-levelalignment. The Matched Fragment Sets (MFS’) are stored in a 2Dblock
Figure 5 describes a pseudo-code of gMaxSub. First,
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