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Effect of positional dependence and alignment strategy on modeling transcription factor binding sites

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Academic year: 2020

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Figure

Table 1 Consensus derived from binding sites alignedusing ClustalW2 (left) and simple sorted (right) multiplesequence alignment algorithms
Figure 1 Effect of IC on alignment and PS (region, PS scopes are placed in x-axis, from left to right, in the following order: no PS, scopes 1–10, and full scope
Figure 2 Performance of all configurations in H. sapiens. If a PS scope produces significantly better performance than that produced by itsprevious scope and is followed by a scope where the performance does not change significantly, it is marked with a diamo
Figure 3 Effect of alignment on IC and PS (M. musculus). A diamond marker indicates where a configuration performs significantly better thanthe other in the same PS scope.
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