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DOPA: GPU based protein alignment using database and memory access optimizations

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Figure

Figure 2 Memory model. CUDA memory hierarchy.
Figure 3 The effect of coalescing on memory reads. The figure demonstrates the coalescing phenomenon.
Figure 4 Description of the DOPA GPU implementation. The figure presents a block diagram description of the DOPA GPU implementation.
Figure 5 The database conversion. The figure illustrates the database conversion process.
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