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Inferring the Evolutionary History of Rice Yellow Mottle Virus from Genomic, Phylogenetic, and Phylogeographic Studies

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Figure

TABLE 1. Origins and references of isolates of RYMV used in the study
FIG. 1. Genomic organization of RYMV (bottom) and nucleotide diversity index along the genome (top)
TABLE 2. Diversity indices (average and maximum) calculated on the total (�), synonymous (�s), and nonsynonymous (�a) sites and theratio (� � �a/�s) for the four ORFs after alignment of the 16 RYMV sequences
FIG. 3. Pairwise comparisons and corresponding linear regression lines of geographic distance (in kilometers, after logarithmic transformation)and genetic distance (percent divergence in nucleotides) between each of the 16 isolates calculated on the full genome, on each ORF, and on the
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