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Design, Analysis, And Computational Methods For Engineering Synthetic Biological Networks

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Figure

Figure 1.1: The Markov state space associated with the chemical master equa-dimensional vector whose values are all possible combinations of counts of speciestween states, according to the four chemical reactions in equations (under the assumption that sta
Figure 1.3: The finite state projection method. For chemical reactions in 1.9- 1.11,we truncate the infinite state space of the associated CME to a finite state space J(blue rectangle)
Figure 1.4: The engineering design cycle as a methodical approach to problemsolving. The design cycle is a process by which an engineering (or biological)system is iteratively designed, built, tested, and refined until it becomes sufficientlyimproved in perfo
Figure 1.5: Reference tracking. The error measures the difference between theoutput of the process and the reference specified by the user.When the errorconverges to a real value as a function of time, we refer to it as the steady stateerror
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