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False discovery proportion estimation by permutations: confidence for significance analysis of microarrays

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Table 2: Estimates of P(estimate < F DP ) for α = 0.5. Each estimate is based on 5000 simulations, such that it differs less than 0.015 from the real value with probability at least 95%.
Table 4: 95%-confidence intervals for E(upper bound). The column below
Table 6: The last column shows the average absolute difference between the two upper bounds of the FDP
Table 7: The same simulation setting as in Sections 5.2 and 5.3 was taken.
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