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Quantifying single cell secretion in real time using

resonant hyperspectral imaging

José Juan-Colás

1,2*

, Ian S. Hitchcock

3

, Mark Coles

4

, Steven Johnson

2

and

Thomas F. Krauss

1

1Department of Physics, University of York, Heslington, York YO10 5DD, UK

2 Department of Electronic Engineering, University of York, Heslington, York YO10 5DD, UK 3 Department of Biology, University of York, Heslington, York YO10 5DD, UK

4 Kennedy Institute of Rheumatology, University of Oxford, Headington, Oxford OX3 7FY, UK

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Abstract

Cell communication is primarily regulated by secreted proteins, whose inhomogeneous secretion often indicates physiological disorder. Parallel monitoring of innate protein secretion kinetics from individual cells is thus crucial to unravel systemic malfunctions.

Here, we report a label-free, high-throughput method for parallel, in vitro and real-time

analysis of specific single-cell signalling using hyperspectral photonic crystal resonant technology. Heterogeneity in physiological thrombopoietin expression from individual HepG2 liver cells in response to platelet de-sialylation was quantified demonstrating how mapping real-time protein secretion can provide a simple, yet powerful approach for studying complex physiological systems regulating protein production at single-cell resolution.

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Significance

Cell communication is primarily regulated by secreted proteins.However,

inhomogeneous secretion may indicate commencement of disease. Therefore, the ability to parallelly monitor innate individual cell secretion kinetics is crucial to understand systemic malfunctions. Here, we report a high-throughput method for parallel, in vitro and real-time analysis of specific single-cell signalling using

hyperspectral photonic crystal resonant technology without the need of adding any fluorescent label. We mapped the secretion of a signalling protein (TPO) from individual human HepG2 cells and for the first time quantify the heterogeneity in TPO expression

as a function of the desialylated (aged) platelet level concentration.Given its ease of

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\body

Proteins that are secreted from cells into the extracellular matrix make up 13-20% of the entire human proteome(1). These secreted proteins typically function as mediators of cell-cell signalling and cellular proliferation and thus play an important role in a wide variety of important physiological and pathological processes. A prime example of this is

haematopoiesis, which is tightly regulated by the paracrine or endocrine secretion of cytokines and hormones to maintain haematopoietic stem cells and drive specific lineage differentiation. Impairment of this regulatory system, through organ failure or deleterious mutations, can result in malignant overproduction of blood cells, aberrant immune function or bone marrow failure.

Current understanding of secreted proteins is based largely on traditional proteomic analysis, such as enzyme-linked immunosorbent assays (ELISA) and mass spectrometry (MS), of proteins in the extracellular medium. While these techniques provide the high sensitivity required to detect low concentrations of proteins secreted into the surrounding matrix, a comprehensive understanding of protein secretion also requires tools with sufficient resolution to map the temporal and spatial regulation of secretion. For example, cytokine secretion by innate immune cells is orchestrated between cells to provide an initial inflammatory or allergic response and later to ensure this response subsides in a timely and coordinated fashion. Traditional ELISA and MS both lack the spatial and temporal resolution required to map the kinetics of such tightly regulated and orchestrated protein secretion. Furthermore, single cell analytical techniques have shown that individual cells with apparently identical phenotype, exhibit heterogeneity in protein secretion. Thus, the ability to interrogate and monitor biological systems at the single-cell level provides a precise route for determining which variation is random and which is meaningful, and for building better models of the behavior of individual cells. Again, ELISA and MS typically measure the average response of a cell-population at a fixed time point and are thus unable to screen the “hidden world” beneath population

averages(2). Robust and non-disruptive methodologies to profile protein secretion at the single cell level and to map changes in secretion due to cooperative interactions or exposure to therapeutics are critical if we are to fully understand their role in both healthy and diseased states.

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temporal resolution of this approach. Furthermore, the need to spatially confine single cells within individual microwells precludes the possibility of mapping protein secretion in cellular communities in which protein secretion is orchestrated between interacting cells. More recently, an optofluidic approach based on nanoplasmonic sensing has been proven as a specific and sensitive technique to measure cytokine secretion at the single-cell level(4). While overcoming the need for a detection antibody due to its intrinsic ultra-sensitivity (detection limit in the pg/mL range), this spectroscopic approach is designed to report protein secretion from an isolated single-cell, thus is not able to map orchestrated protein secretion in cellular communities or provide high throughput analysis of secretion dynamics. Similarly, McDonald et al. demonstrated an alternative approach for the real-time detection of secreted proteins based on interferometric detection of scattered light (iSCAT)(5). While this removed the limitations imposed by fluorescently labelled antibodies and microfluidic confinement, the lack of immunoreagents limits the specificity of the approach; iSCAT is sensitive to individual proteins with molecular weights in the range 100−1100 kDa, but lacks specificity to

differentiate between proteins within this range. Furthermore, the field of view was here limited

to only 6 𝜇m, again unable to report parallel secretion from single cells within large populations.

Here, we present a simple, yet powerful technology to monitor and quantify orchestrated cell-signaling at the single cell level, in real-time and in a label-free manner using photonic crystal resonant imaging. Photonic crystal structures, including 1D gratings, have recently gained considerable attention as they offer the same evanescence wave sensing principle(6) and performance of surface plasmon resonant (SPR) sensors without the need of complex instrumentation e.g. bulk prism-coupling instrumentation, allowing further integration with diverse laboratory based apparatus, such as phase contrast and fluorescent microscopy. Photonic crystal resonant surfaces (PCRS) consisting of silicon nitride (Si3N4), or titanium dioxide (TiO2), have been demonstrated that allow label-free cellular imaging with subcellular spatial resolution (resolution 2-6 µm depending on the device orientation) through resonant wavelength based hyperspectral imaging(7) (see Methods). Essentially, PCRS exhibit a spatially confined resonant wave at specific wavelengths, which interferes constructively or destructively with the incoming light beam, leading to a minima (maxima) in the transmission (reflection) spectrum (see Supplementary Information). Moreover, PCRS can be fabricated over large areas to provide a high field-of-view (the order of centimeters), to allow parallel imaging of multiple cells without affecting the intrinsic spatial resolution.

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changes such as those originating from protein-ligand binding events occurring on the sensor surface, all in real-time, label-free and a quantifiable manner(8). By functionalizing the

photonic crystal sensor surface with capture molecules (e.g. antibodies), the surface can thus be rendered sensitive to specific biomolecules secreted by the cells, enabling mapping of protein secretion gradients at the single-cell level without the need of a fluorescent label. Instead of immobilizing antibodies such that they are ordered on a single plane on the sensor surface, we increased the density of antibodies within the evanescence wave of the PCRS, and thus the detection sensitivity, by creating a 3D network using branched glucan dextran (see Methods). The surface was finally treated with purified casein to inhibit non-specific binding of other molecules secreted into the extracellular matrix (see Methods and

Supplementary Information) (Figure 1b). This blocking approach allowed us to maximise the signal-to-noise ratio of our detection system and perform long-term analysis of cellular activities under appropriate conditions.

To demonstrate the performance of our technology, we first mapped the secretion of thrombopoietin (TPO) from an immortal cell line comprised of baby hamster kidney cells (BHK). TPO is a haematopoietic cytokine essential for driving the differentiation of

megakaryocytes and maintaining physiological levels of circulating platelets. Additionally, TPO is one of only a small number of cytokines responsible for maintaining haematopoietic stem cells. The TPO secreting BHK cells (BHK-TPO(9)) used here constitutively release TPO without the need for an extracellular triggering biomolecule (see Methods and Supplementary Information). The BHK-TPO cells are also adherent, and assemble in a monolayer on the sensor surface, which here was functionalized with antibodies selective against TPO (see Methods) to map the secretion of TPO from individual BHK-TPO cells. A resonant image of the PCRS prior to cell adhesion (i.e. PCRS functionalized with dextran, anti-TPO antibodies and casein) was recorded (Figure 1d) over a 55 x 40 µm region of interest and the fraction of pixels resonant at a specific wavelength plotted on a histogram (Figure 1c). The mean resonance wavelength of the functionalized PCRS was subsequently fixed to 0 nm to provide a baseline resonant image. The width of this Gaussian distribution (± 0.5 nm) is largely a consequence of inhomogeneity in the surface chemistry plus experimental error and thus a threshold of 1 nm was set. Shifts in the resonance wavelength above this threshold arise due to local changes in refractive index due to binding of BHK-TPO cells/ TPO to the surface.

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the PCRS induced a change in the resonance wavelength over the region of interest (Figure 1g) which again can be quantified by the histogram of the fraction of pixels resonant at a specific wavelength (Figure 1f).

Subsequently, resonant images of the region of interest collected at 3-minute time intervals showed a shift in the resonance frequency around the periphery of the immobilized cell, corresponding to an increase in the local refractive index, the spatial extent of which increased with time. This can be seen in the contour plot of Figure 1i (also see Supplementary

Information), which shows the spatial position over the region of interest at which the resonance wavelength increases beyond the 1 nm threshold. This increase in resonant frequency around the cell is associated with the local increase in refractive index due to TPO secreted from the BHK cell binding to the anti-TPO antibodies immobilized on the PCRS. This is further confirmed by the absence of a shift in resonant frequency in control experiments where the surface was functionalized with an antibody which lacks specificity to TPO (here, the surface was functionalised with antibodies specific for immunoglobulin G, IgG) or when using BHK-TPO cells in which the TPO secretion has been supressed using the protein transport inhibitor brefeldin A (Figure 2f and g).

To aid comparison between experiments and quantify the kinetics of protein secretion from a single cell, we define the total secretion area covered by the cell and surface bound TPO (i.e. the area equivalent to a shift in resonant frequency 1 nm above the background resonance). To further calibrate the measurement, we subsequently subtract the region relative to cell attachment from this total secretion area, which is statistically delimited by a shift in resonant frequency of 1.7 nm ± 0.1 nm (see Supplementary Information). Figure 1j shows the change in total secretion area covered by the contour plot as a function of time. Assuming the secreted TPO bind to the surface immobilized antibody as a single adsorption process, the time evolution of this secretion process can be modelled as a Langmuir adsorption distribution yielding a single cell secretion rate of 22 µm2/h (coefficient of determination R2 of 0.94 ± 0.04) (see Methods).

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was monitored every 3 minutes for a duration of 130 min (Figure 2e N.B. for clarity a region of interest of 160 x 210 µm is shown at timepoints 0, 8, 15 and 23 min). To demonstrate the specificity of our assay we also challenged our PCRS sensor with two different control systems. In the first control, the PCRS was functionalised with a control antibody and challenged with BHK-TPO cells (Figure 2f). The second control comprised a surface

functionalised with anti-TPO challenged with a population of BHK-TPO cells treated with the protein transport inhibitor brefeldin A to supress secretion of TPO (Figure 2g) (see Methods). Secretion of TPO and subsequent binding to surface immobilized anti-TPO led to an increase in the resonant frequency around each of 30 BHK-TPO cells (Figure 2a). After 120 min, TPO secreted from the BHK-TPO cells had diffused isotropically away from each cell over an

average secretion area of 𝚪anti-TPO ~ 720 µm2 around each cell. In contrast, the average shift in resonant frequency around individual cells in the control experiments was minimal due to the inhibition of TPO secretion from BHK-TPO cells treated with brefeldin A and the lack of specificity of the anti-IgG sensor for TPO (Figure 2h).

The wide field of view coupled with high spatial resolution allows statistical analysis of protein secretion from individual cells. Histograms of surface adsorption for each BHK-TPO cell (Figure 2i) revealed a high degree of heterogeneity in terms of TPO secretion (standard

deviation of 𝚪anti-TPO ~ 120 µm2). This contrasts the control system treated with brefeldin A

which exhibits a lower standard deviation (𝚪brefeldin A ~ 60 µm2) due to the homogeneity of the non-secreting system. The heterogeneity of protein secretion was also observed in the kinetics of TPO secretion (See Methods, Figure 2i). The average rate of protein secretion from BHK-TPO cells and adsorption onto surface immobilized anti-BHK-TPO was κanti-TPO ~ 22 µm2/h

(coefficient of determination R2 of 0.94 ± 0.04), significantly higher than the kinetics of non-specific adsorption observed in the control systems (~ 9 µm2/h and ~ 6.5 µm2/h for κ

anti-IgG and

κbrefeldin A, respectively).

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TPO protein upregulation and the kinetics of TPO secretion at the single cell level have yet to be quantified. We have thus applied our method to answer these important questions.

We studied platelet-mediated regulation and secretion of TPO from exemplar human cells (HepG2 cell line human hepatocyte carcinoma, see Methods) over a 500 x 500 µm2 region of interest. TPO secretion was monitored using a PCRS functionalized with anti-TPO and recorded as a function of exposure to human platelets with differing levels of desialylation(15) (See Methods). Three exemplar systems were employed to fully evaluate platelet-mediated secretion of TPO by HepG2 cells (see Methods and Supplementary Information): 1) TPO secretion from HepG2 cells incubated with artificially aged platelets (anti-TPO + desialylated PL) (~99% desialylation, see Supplementary Information). 2) TPO secretion from HepG2 cells incubated with human platelets with naturally occurring levels of sialyation (anti-TPO +

sialylated PL) (~8-9% desialylation, see Supplementary Information). 3) Inherent TPO

secretion from HepG2 cells (anti-TPO). An additional control measurement involving a surface functionalized with anti-IgG was also performed to characterize the degree of non-specific binding (anti-IgG). While HepG2 cells inherently secrete TPO (Figure 3f,i), the expression of TPO is consistently higher for HegG2 cells challenged with desialylated platelets (Figure 3b, f, g). Not only do we observe upregulation of TPO upon exposure to desialylated platelets, but we also see that TPO secretion is highly consistent between individual HepG2 cells (total of 30 cells). In contrast, TPO secretion from HepG2 cells challenged with naturally occurring levels of desialylated platelets (Figure 3f,h) displayed wide heterogeneity. We believe this reflects the heterogeneity of platelet age. Specifically, we find only 8 – 9% of platelets in the extracted sample are desialylated (see Supplementary Information) and are thus able to upregulate TPO expression in the HepG2 cells. These measurements agree with the recent theory of TPO regulation which states that TPO levels are directly dependent on the concentration of circulating desialylated platelets. This validation highlights how our system can provide a simple, yet powerful approach for studying complex physiological systems in vitro at the single-cell resolution.

We have presented a real-time and label-free single-cell signalling analysis method based on photonic crystal resonant surfaces. The high spatial resolution of the method, coupled with the large field of view (whose dimensions are ultimately limited by the optical objective integrated in the system) and molecular specificity of the assay, enables high throughput measurements of the dynamics of protein secretion from single-cells within a cell population. These

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show that TPO levels are directly dependent on the concentration of circulating desialylated platelets. Given its ease of use, simple computing implementation and compatibility with standard inverted microscopes and other imaging techniques such as phase-contrast

microscopy, we anticipate that PCRS the method will transform single-cell protein expression

analysisfrom an experts-only technique into a broadly accessible single-cell signalling imaging

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Methods

Photonic crystal resonant imagining surface

The imaging surface consists of a grating etched into a 150 nm thick silicon nitride (Si3N4) film on glass and is fabricated using electron beam lithography and reactive ion etching, which allows for multiple re-uses after cleaning. For more detail, refer to our previous work(10, 16). First, the Si3N4 is cleaned in a piranha solution (1:3 hydrogen peroxide: sulfuric acid), rinsed in acetone and isopropanol, and dried with nitrogen. Next, the e-beam resist (ARP-09, AllResist GmbH) is spin-coated for 60 s at 3000 rpm, and soft baked on a hot plate at 180°C for 10 min.

For charge dissipation during e-beam exposure, a thin film of aluminium (∼ 20 nm) is

deposited on top of the resist using a thermal evaporator (HEX, Mantis). The e-beam system (Voyager, Raith GmbH) exposes the resist with a base dose of 130 μC/cm2, after which it is developed for 2 min in Xylene, then rinsed with isopropanol and dried in N2. A sensor area of 2 x 2 mm is exposed per device, consisting of a grating with period of 555 nm and a fill factor of 80% to obtain a resonance wave centred around 840 nm wavelength. To transfer the grating into the Si3N4, it is etched with a CHF3:O2 gas mixture at 29:1 sccm, an RF power of 40 W, and a chamber pressure of 1.9 e−1 mbar, over 7 min etch time. Finally, to strip the remaining resist, the sample is sonicated in 1165 solvent (MicroChem) for 3 min, followed by a rinse in acetone and isopropanol, following a drying step with N2.

Hyperspectral imaging measuring setup

A resonance image is formed by taking a sequence of bright field images, each at a different illumination wavelength which is achieved by illuminating through a tuneable filter

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each image pixel images a size of 0.925 μm. To provide some flexibility in matching the illumination wavelength to the resonance wavelength of the fabricated grating, we use a broadband laser (SM30, Leukos), combined with a custom-built grating-based monochromator to select a single illumination wavelength with a spectral width of 0.6 nm (0.25 nm wavelength step). To further improve the resolution of the images we interpolate the values between pixels down to low pm values. Images were captured using LabView, and image analysis and curve fitting were performed using MatLab. The pixel fraction histogram to set the 1 nm threshold is obtained by dividing the total number of resonant pixels at a specific wavelength against the total number of pixels in the region of interest. We also incorporated a fluidic well for cell culturing made from acrylic, which is attached to the sensor chip to allow exposure to various analytes, while encapsulating the whole device setup inside an incubator set at 37°C.

Specific surface functionalisation towards TPO proteins

Si3N4 sensor chips are carefully cleaned prior to use, consisting of a 10 min cleaning step in an ultraviolet−ozone cleaner., followed by placing in solutions of Hellmanex III (2%) and ultrapure Milli-Q water (twice) and sonication in each bath for 10 min. The sensors are then dried with N2 gas and returned to the ultraviolet−ozone cleaner for 30 min, following an exposure to 15% nitric acid solution to reveal the oxide groups on the Si3N4 surface. Finally, the clean and hydroxyl-activated sensors are immediately transferred in a 3 % v/v aminopropyltriethoxy silane (APTES) solution in ethanol and left overnight.Finally, the chips are dried with N2 gas and a curing step is performed at 110 °C for 1 hour., then loaded in the acrylic mount of the measuring setup (temperature controlled at 37°C) and injection of Milli-Q water (see

Supplementary Information). Oxidized 2% (20 mg/mL) dextran solution (Dextran T40 (40 kDa), 30 mM NaIO4, Sigma Aldrich) is sequentially injected and left for 90 min(17), rinsed in Milli-Q water, further oxidized in 30 mM NaIO4 for 90 min and rinsed again in Milli-Q water (see Supplementary Information). The surface is then rinsed in phosphate-buffered saline (PBS, pH 7.4) and E.coli derived animal-free recombinant human TPO (PeproTech) antibodies are thereafter injected at 50 μg/mL in PBS (pH 7.4) and left for 60 min. To prevent non-specific binding from other biomolecules expressed from either BHK or HepG2 cell lines, casein-blocking agent is incorporated in the assay. We found an optimal concentration of 0.35x and 0.5x (in PBS pH 7.4) for BHK and HepG2 cell lines, respectively (see Supplementary

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Cell adsorption kinetics modelling

Real-time expression of signalling molecules from single cells and their binding to the capture molecules of the functionalised sensor surface was modelled as a Langmuir adsorption isotherm by assuming both processes as the same, global adsorption process. The equation to fit the secretion area of each cell per time unit is:

Secretionarea=N0 κ∗t 1+κ∗t

(Equation1)

with N0 the offset of the area covered by the binding of signalling molecules in µm2, κ the

Langmuir adsorption rate (µm2/h) and t the time in h. A least-squares regression analysis was used to find the best fit for our dataset, which yields a coefficient of determination R2 of 0.94 ± 0.04 for the 30 BHK-TPO cell population under study.

BHK-TPO and HepG2 cell lines culture

BHK-TPO and HepG2 cells werecultured at 37 °C in a 5% CO2 incubator in DMEM

supplemented with 10% FBS, 1% Pen-Strep and 25 mM Hepes. Both BHK-TPO and HepG2 sub-confluent cultures were kept at 2-4x10,000 cells/cm2. Cell monolayers were passaged following a rinse with 1x PBS (twice) and pre-warmed (37°C) TrypLE Express (Gibco) solution to cover the bottom of the flask; incubated for 5 and 10 minutes, respectively.Once cells detached TrypLE Express was neutralized by adding 2x volume of complete growth medium.

Isolation of human platelets from whole blood and platelet count

Venous blood was collected from healthy volunteers and platelets were prepared following the protocol described in(18). In short,using a 19-G butterfly needle, venous blood is taken into vacutainers and anticoagulated 5:1 with acid-citrate-dextrose (ACD) (65 mM trisodium citrate, 70 mM citric acid, 100mM dextrose, pH 4.4). Platelet-rich plasma (PRP) is obtained by

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2.7 mM KCl, 3.3 mM NaH2PO4, pH 7.4; all from Sigma Aldrich). Prior to any experimental procedure, platelets are left at room temperature for 30 min; after 30min, most of the PGE1 has become inactive. Flow cytometry was employed to count the number of platelets per millilitre (see Supplementary Information).

Platelet desialylation

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Acknowledgements

The research was supported by the MRC Discovery Grant MC_PC_15073 and by the EPSRC Programme Grant EP/P030017/1. The dataset associated with this research will be available online from the University of York Data Catalogue at DOI 10.15124/dffb9f91-cd1e-490e-8813-da88da18f16b. We thank Oliver Herd for his assistance in optimizing the different cell lines culture and in performing qPCR control experiments and the Imaging and Cytometry Technology Facility in the Department of Biology, University of York.

Author contributions

J.J.C. designed the structures, fabricated the samples, developed the measuring method and performed the calculations and measurements. S.J. and T.F.K. conceived the idea and supervised the project. I.S.H. and M. C. developed the idea of quantifying heterogeneity in the different cell lines. All authors contributed to the writing of the manuscript.

Competing financial interests

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References

1. Mukherjee P, Mani S (2013) Methodologies to decipher the cell secretome. Biochim Biophys Acta - Proteins Proteomics 1834(11):2226–2232.

2. Altschuler SJ, Wu LF (2010) Cellular Heterogeneity: Do Differences Make a Difference? Cell 141(4):559–563.

3. Shirasaki Y, et al. (2014) Real-time single-cell imaging of protein secretion. Sci Rep 4. doi:10.1038/srep04736.

4. Li X, et al. (2018) Label-Free Optofluidic Nanobiosensor Enables Real-Time Analysis of Single-Cell Cytokine Secretion. Small 1800698:1–11.

5. McDonald MP, et al. (2018) Visualizing Single-Cell Secretion Dynamics with Single-Protein Sensitivity. Nano Lett 18(1):513–519.

6. Pitruzzello G, Krauss TF (2018) Photonic crystal resonances for sensing and imaging. J Opt. doi:10.1088/2040-8986/aac75b.

7. Triggs GJ, et al. (2015) Spatial resolution and refractive index contrast of resonant photonic crystal surfaces for biosensing. IEEE Photonics J 7(3). doi:10.1109/JPHOT.2015.2435699.

8. Estevez MC, Alvarez M, Lechuga LM (2012) Integrated optical devices for lab-on-a-chip biosensing applications. Laser Photon Rev 6(4):463–487.

9. Linden HM, Kaushansky K (2002) The Glycan Domain of Thrombopoietin (TPO) Acts intrans to Enhance Secretion of the Hormone and Other Cytokines . J Biol Chem 277(38):35240–35247.

10. Triggs GJ, et al. (2015) Spatial resolution and refractive index contrast of resonant photonic crystal surfaces for biosensing. IEEE Photonics J 7(3). doi:10.1109/JPHOT.2015.2435699.

11. Kuter DJ, Rosenberg RD (1995) The reciprocal relationship of thrombopoietin (c-Mpl ligand) to changes in the platelet mass during busulfan-induced

thrombocytopenia in the rabbit. Blood 85(10):2720 LP-2730.

12. Fielder PJ, et al. (1996) Regulation of thrombopoietin levels by c-mpl-mediated binding to platelets. Blood 87(6):2154 LP-2161.

13. Christoph E, Markus L, Horst F, Stephan S (2001) Endogenous thrombopoietin serum levels during multicycle chemotherapy. Br J Haematol 105(3):832–838.

14. Grozovsky R, et al. (2015) The Ashwell-Morell receptor regulates hepatic thrombopoietin production via JAK2-STAT3 signaling. Nat Med 21(1):47–54.

15. Pshezhetsky A V, Ashmarina LI (2013) Desialylation of surface receptors as a new dimension in cell signaling. Biochem 78(7):736–745.

16. Triggs GJ, et al. (2017) Chirped guided-mode resonance biosensor. Optica 4(2):229–234.

17. Jönsson C, et al. (2008) Silane-dextran chemistry on lateral flow polymer chips for immunoassays. Lab Chip 8(7):1191–7.

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Figure Legends

Figure 1. Photonic crystal resonant imaging protocol for monitoring TPO secretion from a single

BHK-TPO cell. a Comparison between a photonic crystal resonant imaging hyperspectral image (top)

and a phase-contrast microscope image (bottom) of a single BHK cell attached to a PCRS. Higher resonance wavelength shifts observed using PCRS are related to higher refractive index values, originating from the presence of both the cell and the secreted biomolecules. Secreted molecules are transparent and cannot be resolved by phase contrast microscopy. b Dextran molecules are employed to create a 3D network of antibodies. Casein protein is employed as a blocking agent to prevent non-specific binding from other proteins expressed by the cells. The secreted cytokines (i.e. TPO) from attached cells diffuse through the 3D network to specifically bind to the antibodies immobilized throughout the dextran network. The amount of deposited casein protein is optimised to maximise the signal-to-noise ratio of the detection system. c Gaussian distribution of the fraction of resonant pixels over the defined region of interest prior to BHK-TPO immobilization. Here the width of the Gaussian distribution was ± 0.5 nm and the mean was set to 0 nm. d The region of interest (55 x 40 µm), with a wavelength uniformity of  ± 0.5 nm. e No content is observed for the chosen threshold value of 1 nm, indicating that no cell is present. f Upon attachment of the cell to the surface, the distribution of the pixel probability of the resonance wavelength over the defined region of interest increases to -0.2<2.2 nm, indicating the presence of biomolecular content associated to the presence of both BHK-TPO and secreted TPO. g A hyperspectral PCRS image reveals the adhesion of a BHK-TPO cell to the PCRS, whose high concentration of CAMs located in the inner region are translated into a higher refractive index content area. h By setting a threshold of 1 nm from the central resonance wavelength, a contour plot is obtained representing the area defined by the adhered BHK-TPO cell. i Over time, this secretion area increases as TPO molecules are secreted from the cell and bind to the surface immobilised antibodies, therefore locally increasing the refractive index around the BHK-TPO area. j

The secretion of TPO is then monitored over time, and a Langmuir adsorption distribution is fitted to the data to model the secretion from the BHK-TPO cell accounting for the area covered by the adhered cell.

Figure 2. Single-cell dynamics analysis of a 30 BHK-TPO cell population. a-d Hyperspectral contour plots (at a threshold of 1 nm above the average resonance wavelength) at 0, 8, 15 and 23 min, respectively of a 160 x 210 µm region of interest where BHK-TPO cells attach to the functionalised PCRS. e Individual traces of the real-time secretion area coverage of a 30 cell BHK-TPO population on a TPO specific functionalized surface. The robustness and the versality of our method was further demonstrated by challening the PCRS with two different 30 cell population control systems: f firstly with a system in where the surface was rendered IgG selective (the fluctuation over time is attributed to the accumulation of non-specific interactions between the secreted TPO and immobilised IgG antibodies), and g secondly with a BHK-TPO population treated with the protein transport inhibitor brefeldin A. h The real-time response from the three systems over 130 min yielded notable and quantitative differences. The direct system (BHK-TPO with a TPO selective PCRS functionalization, in red) exhibited an average secretion area coverage 𝚪anti-TPO ~ 720 µm2, while this average secretion area coverage was nearly

reduced to a half in the two control systems (𝚪anti-IgG ~ 400 µm2 (orange), 𝚪brefeldin A ~ 300 µm2 (green)),

indicating the specificty and robustness of both assay and extraction method. The shaded areas represent the standard deviation for each trace at that time instant. i We analyzed the heterogeneity within each 30 cell population by studying the standard deviation in secretion area coverage distribution at 120 min, which revealed a ~ 2-3 fold higher secretion area in the direct system over the two control systems. j We modelled the Langmuir rate constant associated with each system to deconvolute the influence of the inherent cell attachment area from the measurement. We obtained rates of ~ 22, 9 and 6.5 µm2/h for the direct, non-specific and non-expressing systems, respectively.

Figure 3. Levels of desialylated platelets affect TPO expression from HepG2 cells. a Real-time

TPO secretion from a population of 30 HepG2 cells using hyperspectral PCRS imaging. Average TPO secretion from HepG2 cells cultured in a 1000 platelets/cell media with 99 % desialylated platelets is 1.5 times higher than the inherent TPO (see Methods and Supplementary Information). The shaded areas represent the standard deviation for each trace at that time instant. b Traces within the 30 HepG2 cell population exhibit a small standard deviation in the area of secretion of 𝚪anti-TPO,-sia ~ 320 µm2. c In

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platelets show a standard deviation of 𝚪TPO,+sia ~ 600 µm2, indicating a high degree of heterogeneity due

to unsynchronised and uneven TPO expression within the population with respect to the system shown in b). d-e Reference and control systems, respectively, exhibit lower TPO expression and similar heterogeneity (𝚪anti-TPO and 𝚪anti-IgG~ 280 and 330 µm2, respectively) to the system challenged with a rich

desialylated platelet media. f Scatter plot of the individual secretion area from each individual cell within the population of the different systems after 180 min. The box indicates the 25th and 75th percentiles of the samples, respectively. TPO secretion from cells exposed to 99 % and 8-9 %desialylated platelets, respectively, was found to be κanti-TPO + desialylated PL 17 µm2/h and κanti-TPO + sialylated PL 13 µm2/h (see

References

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