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A Graph Kernel for Protein Protein Interaction Extraction

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Academic year: 2020

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Figure

Figure 1: Stanford dependency parses (“collapsed” rep-resentation) where the shortest path, shown in bold, ex-cludes important words.
Figure 2: Graph representation generated from an example sentence. The candidate interaction pair is marked asPROT1 and PROT2, the third protein is marked as PROT
Table 1: Counts of positive and negative examples in the corpora and (P)recision, (R)ecall (F)-score and AUC for thegraph kernel, with standard deviations provided for F and AUC.
Table 2: (P)recision, (R)ecall and (F)-score results for methods evaluated on AImed with the correct cross-validationmethodology.

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