BECS Publications 2009-2011
20091. Auranen, Toni; Nummenmaa, Aapo; Vanni, S.; Vehtari, Aki; Hämäläinen, MS.; Lampinen, Jouko; Jääskeläinen, Iiro. Automatic fMRI-guided MEG multidipole localization for visual responses. Human Brain Mapping, 2009 . Vol. 30, nro 4, 1087-1099.
2. Vanhatalo, Jarno; Vehtari, Aki. Discussion to 'Approximate Bayesian inference for latent Gaussian models by using integrated nested Laplace approximations' by Håvard Rue, Sara Martino and Nicolas Chopin. Journal of the Royal Statistical Society, Series B (Statistical Methodology), 2009. Vol. 71, nro 2, 383.
3. Sund, R.; Riihimäki, Jaakko; Mäkelä, M.; Vehtari, Aki; Lüthje, P.; Huusko, T.; Häkkinen, U. Modeling the length of care episode after hip fracture: does the type of fracture matter?. Scandinavian Journal of Surgery, 2009. (Accepted).
4. Onnela, Jukka-Pekka; Johnson, N.F.; Gourley, S.; Reinert, G.; Spagat, M. Sampling bias in systems with structural heterogeneity and limited internal diffusion. Europhysics Letters, 2009. Vol. 85, nro 2, 28001.
5. Heimo,Tapio; Kaski, Kimmo; Saramäki, Jari. Maximal spanning trees, asset graphs and random matrix denoising in the analysis of dynamics of financial networks. PHYSICA A, 2009. Vol. 388, nro 2-3, pp. 145-146.
6. Andersen, T. S.; Tiippana, Kaisa; Laarni, J.; Kojo, I.; Sams, Mikko. The role of visual spatial attention in audiovisual speech perception. Speech Communication, 2009. Vol. 51, nro 2, pp. 184-193. 7. Marjamaa, A.; Salomaa, V.; Newton-Cheh, C.; Porthan, K.; Reunanen, A.; Karanko, H.; Jula, A.;
Lahermo, P.; Väänänen, Heikki; Toivonen, Lauri; Swan, H.; Viitasalo, M.; Nieminen, MS.; Peltonen, L.; Oikarinen, L.; Palotie, A.; Kontula, K. High prevalence of four long QT syndrome founder mutations in the Finnish population. Annals of Medicine, 2009. Vol. 41, nro 3, pp. 234-40.
8. Mucha, Peter; Richardson, Thomas; Macon, Kevin; Porter, Mason; Onnela, Jukka-Pekka. Community Structure in Time-Dependent, Multiscale, and Multiplex Networks. 2009. Elektroninen julkaisu http://arxiv.org/abs/0911.1824v1 (open access)
9. Onnela, Jukka-Pekka; Reed-Tsochas, Felix. The Spontaneous Emergence of Social Influence in Online Systems. 2009. Elektroninen julkaisu: http://arxiv.org/abs/0912.0045v1 (open access) 10. Vanhatalo, Jarno; Jylänki, Pasi and Vehtari, Aki. Gaussian process regression with Student-t
likelihood. iNIPS 2009, Vancouver, 5.-12.12.2009. 2009, Y. Bengio and D. Schuurmans and J. Lafferty and C. K. I. Williams and A. Culotta. 500, pp. 1910-1918.
11. Stenroos, Matti. The transfer matrix for epicardial potential in a piece-wise homogeneous thorax model: the boundary element formulation. Physics in Medicine and Biology, 2009. Vol. 54, nro 18, pp. 5443-5455.
12. Åström, Jan A.; Kumar, P. B. Sunil; Karttunen, M. Aster formation and rupture transition in semi-flexible fiber networks with mobile cross-linkers. Soft Matter, 2009. Vol. 5, nro 15, pp. 2869-2874.
13. Koskinen, S.; Putkonen, Päivi; Granström, M.; Gaily, E. Quality of Life After Epilepsy Surgery in Children and Adolescents. Epilepsia, 2009. Vol. 50, nro s4, p. 142.
14. Putkonen, Päivi; Jutila, L.; Aronen, P.; Immonen, A.; Kinnunen, J.; Sintonen H (Sintonen, H.;
Kälviäinen, R. Cost-effectiveness of Surgery for Intractable Temporal Lobe Epileps. Epilepsia, 2009. Vol. 50, nro s4, p. 260.
15. Hogman, Marieann; Lafih, Jaroslava; Meriläinen, Pekka; Broms, Kristina; Malinovschi, Andrei; Janson, Christer. Extended NO analysis in a healthy subgroup of a random sample from a Swedish population. Clinical Physiology and Functional Imaging, 2009. Vol. 29, nro 1, pp. 18-23.
16. Vinberg, Frans J.; Strandman, Satu; Koskelainen, Ari. Origin of the fast negative ERG component from isolated aspartate-treated mouse retina. Journal of Vision, 2009. Vol. 9, nro 12, pp. 9.
17. Toth, Bence; Kertesz, Janos. The Epps effect revisited. Quantitative Finance, 2009. Vol. 9, nro 7, pp. 793-802.
18. Eisler, Zoltan; Kertesz, Janos; Lillo, Fabrizio; Mantegna, Rosario N Diffusive behavior and the
modeling of characteristic times in limit order executions. Quantitative Finance, 2009. Vol. 9, nro 5, pp. 547-563.
19. Lioumis, P.; Kicic, Dubravko; Savolainen, P.; Mäkelä, J. P.; Kähkönen, S. Reproducibility of TMS - Evoked EEG Responses. Human Brain Mapping, 2009. Vol. 30, nro 4, pp. 1387-1396.
20. Vitikainen, A.-M.; Lioumis, P.; Paetau, R.; Salli, E.; Komssi, S.; Metsähonkala, L.; Paetau, A.; Kicic, Dubravko; Blomstedt, G.; Valanne, L.; Mäkelä, J.P.; Gaily, E. Combined use of non-invasive
techniques for improved functional localization for a selected group of epilepsy surgery candidates. Neuroimage, 2009. Vol. 45, nro 2, pp. 342-348.
21. Korhonen, P.; Husa, T.; Konttila, Teijo; Tierala, I.; Mäkijärvi, M.; Väänänen, Heikki; Toivonen, L. Complex T-wave morphology in body surface potential mapping in prediction of arrhythmic events in patients with acute myocardial infarction and cardiac dysfunction. Europace, 2009. Vol. 11, nro 4, pp. 514-520.
22. Lehto, M.; Jurkko, R.; Parikka, H.; Mäntynen, V.; Väänänen, Heikki; Montonen, J.; Voipio-Pulkki, L.; Toivonen, L.; Laine, M. Reversal of Atrial Remodeling after Cardioversion of Persistent Atrial Fibrillation Measured with Magnetocardiography. Pacing and Clinical Electrophysiology, 2009. Vol. 32, nro 2, pp. 217-223.
23. Vilen, H.; Hynönen, U.; Badelt-Lichtblau, H.; Jääskeläinen, Pentti; Torkkeli, M.; Palva, A. Surface Location of Individual Residues of SlpA Provides Insight into the Lactobacillus brevis S-Layer. Journal of Bacteriology, 2009. Vol. 191, nro 10, pp. 3339-3349.
24. Alku, Paavo; Magi, Carlo; Yrttiaho, Santeri; Bäckström, Tom; Story, Brad. Closed phase covariance analysis based on constrained linear prediction for glottal inverse filtering. The Journal of the Acoustical Society of America, 2009. Vol. 125, nro 5, pp. 3289-3305.
25. Susac, Ana; Ilmoniemi, Risto J.; Pihko, Elina; Nurminen, Jussi; Supek, Selma. Early Dissociation of Face and Object Processing: A Magnetoencephalographic Study. Human Brain Mapping, 2009. Vol. 30, nro 3 , pp. 917-927.
26. Häyrynen, Teppo; Oksanen, Jani; Tulkki, Jukka. On the origin of divergences in the coincidence probabilities in cavity photodetection experiments. Journal of Physics B: Atomic, Molecular and Optical Physics, 2009. Vol. 42, nro 14, 145506.
27. Heikkilä, Oskari; Oksanen, Jani; Tulkki, Jukka. Ultimate limit and temperature dependency of light-emitting diode efficiency. Journal of Applied Physics, 2009. Vol. 105, nro 9, 093119.
28. Siebner, H.; Bergmann, T.; Bestmann, S.; Massimini, M.; Johansen-Berg, H.; Mochizuki, H.; Bohning, D.; Boorman, E.; Groppa, S.; Miniussi, C.; Pascual-Leone, A.; Huber, R.; Taylor, P..; Ilmoniemi, Risto; De Gennaro, L.; Strafella, A.; Kähkönen, S.; Kloppel, S.; Frisoni, G.; George, M.; Hallett, M.; Brandt, S.; Rushworth, M.; Ziemann, U.; Rothwell, J.; Ward, N.; Cohen, L.; Baudewig, J.; Paus, T.; Ugawa, Y.; Rossini, P. Consensus paper: Combining transcranial stimulation with neuroimaging. BRAIN
STIMULATION, 2009. Vol. 2, nro 2, 58-80.
29. Heikkinen, Hanna; Nymark, Soile; Donner, K.; Koskelainen, Ari. Temperature dependence of dark-adapted sensitivity and light-adaptation in photoreceptors with A1 visual pigments: A comparison of frog L-cones and rods . Vision Research, 2009. Vol. 49, nro 14, pp. 1717-1728.
30. Haldin, C.; Nymark, Soile; Aho, AC.; Koskelainen, Ari; Donner, K. Rod Phototransduction Determines the Trade-Off of Temporal Integration and Speed of Vision in Dark-Adapted Toads. Journal of Neuroscience, 2009. Vol. 29, nro 18, pp. 5716-5725.
31. Kolehmainen, Ville; Schweiger, Martin; Nissilä, Ilkka; Tarvainen, Tanja; Arridge, Simon R.; Kaipio, Jari P. Approximation errors and model reduction in three-dimensional diffuse optical tomography. Journal of the Optical Society of America A, 2009. Vol. 26, nro 10, pp. 2257-2268.
32. Lambiotte R.; Saramäki Jari; Blondel VD. Dynamics of latent voters. Physical Review E, 2009. Vol. 79, nro 4, 046107.
33. Yrttiaho Santeri; Alku Paavo; May Patrick; Tiitinen Hannu. Representation of the vocal roughness of aperiodic speech sounds in the auditory cortex. Journal of the Acoustical Society of America, 2009. Vol. 125, nro 5, pp. 3177-3185.
34. Ou WM.; Nissilä Ilkka; Radhakrishnan H.; Boas DA.; Hämäläinen MS.; Franceschini MA. Study of neurovascular coupling in humans via simultaneous magnetoencephalography and diffuse optical imaging acquisition. NeuroImage, 2009. Vol. 46, nro 3, pp. 624-632.
35. Salminen, Nelli; Tiitinen, Hannu; May, Patrick J. C. Modeling the categorical perception of speech sounds: A step toward biological plausibility. Cognitive, Affective, & Behavioral Neuroscience, 2009. Vol. 9, nro 3, 304-313.
36. Särkelä, Heikki; Takatalo, Jari; May, Patrick; Laakso, Mikko; Nyman, Gote. The movement patterns and the experiential components of virtual environments. International Journal of
Human-Computer Studies, 2009. Vol. 67, nro 9, pp. 787-799.
37. Virtanen, Jaakko; Noponen, Tommi; Meriläinen, Pekka; Salmi, Tapani; Toppila, Jussi. Sleep apnea termination decreases cerebral blood volume: a near-infrared spectroscopy case study. Clinical and Biomedical Spectroscopy, Munich, Germany 2009. 1.
38. Virtanen, Jaakko; Noponen, Tommi; Meriläinen, Pekka. Comparison of principal and independent component analysis in removing extracerebral interference from near-infrared spectroscopy signals. Journal of Biomedical Optics, 2009. Vol. 14, nro 5, 054032.
39. Mäkinen VP; Forsblom C; Thorn LM; Waden J; Kaski Kimmo, Ala-Korpela, M; Groop, P. - H. Network approach to type 1 diabetes: association patterns between diabetic complications and metabolic, clinical and life style risk factors in a set of 4197 patients. Diabetologia, 2009. Vol. 52, nro s1, pp. 383-383.
40. Porthan, K.; Viitasalo, M.; Jula, A.; Reunanen, A.; Rapola, J.; Väänänen, Heikki; Nieminen, MS; Toivonen, L.; Salomaa, V.; Oikarinen, L. Predective Value of Electrocardiographic QT interval and T-wave morphology parameters for all-cause and acrdiovascular mortality in a general population sample. Heart Rhythm, 2009. Vol. 6, nro 8, pp. 1202-8.
41. Hiltunen, Petri; Prince, S. J. D.; Arridge, S. A combined reconstruction classification method for diffuse optical tomography. Physics in Medicine and Biology, 2009. Vol. 54, nro 21, pp. 6457-6476. 42. Heiskala, Juha; Pollari, Mika; Metsäranta, Marjo; Grant, Ellen, P.; Nissilä, Ilkka. Probablistic atlas can
improve reconstruction from optical imaging of the neonatal brain. Optics Express, 2009. Vol. 17, nro 17, pp. 14977-14992.
43. Mäkinen, VP; Forsblom, Carol; Thorn, Lena; Waden, Johan; Kaski, Kimmo; Ala-Korpela, Mika; Groop, Per-Henrik. Network of vascular diseases, death and biochemical characteristics in a set of 4,197 patients with type 1 diabetes (The FinnDiane Study). Cardiovascular Diabetology, 2009. Vol. 8, nro 54.
44. Toivonen, Riitta; Kovanen, Lauri; Kivela, Mikko; Onnela, Jukka-Pekka; Saramaki, Jari; Kaski, Kimmo. A comparative study of social network models: Network evolution models and nodal attribute models. Social Networks, 2009. Vol. 31, nro 4, pp. 240-254.
45. Niemi, J.; Mäkinen, Ville-Petteri; Heikkonen, J.; Tenkanen, L.; Hiltunen, Y.; Hannuksela, M.; Jauhiainen, M.i; Forsblom, C.; Taskinen, M-R; Kesaniemi, Y; Savolainen, M.; Kaski, Kimmo; Groop PH; Kovanen, P.; Ala-Korpela, M. Estimation of VLDL, IDL, LDL, HDL2, apoA-I, and apoB from the Friedewald inputs-apoB and IDL, but not LDL, are associated with mortality in type 1 diabetes. Annals of Medicine, 2009. Vol. 41, nro 6, pp. 451-469.
46. Porthan, K.; Viitasalo, M.; Hiltunen, T.; Väänänen, Heikki; Dabek, Juhani; Suonsyrjä, T.; Hannila-Handenberg, T.; Virolainen, J.; Nieminen, MS.; Toivonen, Lauri; Kontula, K.; Oikarinen, L. Short-term Electrophysiological Effects of Losartan, Bisprolol, Amlodipine and hydrochlorothiazide in
Hypertensive Men. Annals of Medicine, 2009. Vol. 41, nro 1, pp. 29-37.
47. Jurkko, Raija; Mäntynen, Ville; Tapanainen, Jari; Montonen, Juha; Väänänen, Heikki; Parikka, Hannu; Toivonen, Lauri. Non-invasive detection of conduction pathways to left atrium using magnetocardiography: validation by intra-cardiac electroanatomic mapping. Europace, 2009. Vol. 11, nro 2, pp. 169-177.
48. Marjamaa, A.; Newton-Cheh, C.; Porthan, K.; Reunanen, A.; Lahermo, P.; Väänänen, H.; Jula, A.; Karanko, H.; Swan, H.; Toivonen, L.; Nieminen, M. S; Viitasalo, M.; Peltonen, L.; Oikarinen, L.; Palotie, A.; Kontula, K.; Salomaa, V. Common candidate gene variants are associated with QT interval duration in the general population. Journal of Internal Medicine, 2009. Vol. 265, nro 4, pp. 448-458.
49. Liimatainen, T.; Hakumäki, J.M.; Kauppinen, R.A.; Ala-Korpela, Mika. Monitoring of gliomas in vivo by diffusion MRI and 1H MRS during gene therapy induced apoptosis interrelationships between water diffusion and mobile lipids. NMR in Biomedicine, 2009. Vol. 22, nro 3, pp. 272-279.
50. Toivonen, Riitta; Castelló, X.; Eguíluz, V.M.; Saramäki, Jari; San Miguel, M.; Kaski, Kaski. Broad lifetime distributions for ordering dynamics in complex networks. Physical Review E, 2009. Vol. 79, nro 1, 016109.
51. Kumpula, Jussi; Onnela, J.P.; Saramäki, Jari; Kertesz, Janos; Kaski, Kimmo. Model of Community Emergence in Weighted Social Networks. Computer Physics Communications, 2009. Vol. 180, nro 4, pp. 517-522.
52. Tallinen, T.; Åström, Jan; Timonen, J. The effect of plasticity in crumpling of thin sheets. Nature Materials, 2009. Vol. 8, nro 1, pp. 25-29.
53. Onnela, Jukka-Pekka.; Töyli, J.; Kaski, Kimmo. Tick size and stock returns. Physica A, 2009. Vol. 388, nro 4, pp. 441-454.
54. Bikmullina, R.; Kicic, Dubravko; Carlson, S.; Nikulin, V. V. Electrophysiological correlates of short-latency afferent inhibition: a combined EEG and TMS study. Experimental Brain Research, 2009. Vol. 194, nro 4, pp. 517-526.
55. Heiskala, J.; Hiltunen, P.; Nissilä, Ilkka. Significance of background optical properties, time-resolved information and optode arrangement in diffuse optical imaging of term neonates. Physics in Medicine and Biology, 2009. Vol. 54, nro 3, pp. 535-554.
56. Lehtola, Ville; Linna, Riku; Kaski, Kimmo. Dynamics of forced biopolymer translocation. Europhysics Letters, 2009. Vol. 85, nro 058006, pp. 1-6.
57. Särkkä Simo; Nummenmaa Aapo. Recursive Noise Adaptive Kalman Filtering by Variational Bayesian Approximations. IEEE Transactions on Automatic Control, 2009. Vol. 54, nro 3, pp. 596-600.
58. Wang, Jade; Nicol, Trent; Skoe, Erika; Sams, Mikko; Kraus, Nina. Emotion Modulates Early Auditory Response to Speech. Journal of Cognitive Neuroscience, 2009. Vol. 21, nro 11, pp. 2121-2128. 59. Häyrynen, Teppo; Oksanen, Jani; Tulkki, Jukka. Exact theory for photon subtraction for fields from
quantum to classical limit. Europhysics Letters, 2009. Vol. 87, nro 4, 44002.
60. Nissilä, Ilkka; Kotilahti, Kalle; Mustaniemi, Hanna; Lajunen, Atte; Heiskala, Juha; Hiltunen, Petri. High-density optical probe for functional studies of neonates. 446. WE-Heraeus-Seminar Optical Imaging of Brain Function, Bad Honnef, Germany, 7.-10. Dec. 2009. 1.
61. Putkonen, Päivi; Kälviäinen, Reetta. Ohimolohkoon kohdistuva epilepsiakirurgia on kustannusvaikuttavaa hoitoa. Duodecim, 2009. Vol. 125, nro 22, pp. 2500-2.
62. Praxmeyer, Ludmila; Stenholm, Stig.; Vitanov, Nikolay. Characteristics of a pure-state ambiguity function. Journal of Physics A: Mathematical and Theoretical, 2009. Vol. 42, nro 49, 495301. 63. Stenholm, Stig. Entanglement of Pure States. Foundations of Physics, 2009. Vol. 39, nro 6, pp.
642-655.
64. Praxmeyer, Ludmila; Stenholm, Stig; Vitanov, Nikolay. The information of ambiguity. Journal of Modern Optics, 2009. Vol. 56, nro 10, pp. 1205-1219.
65. Plimak, L.; Stenholm, Stig. Causal signal transmission by quantum fields. III: Coherent response of fermions. Annals of Physics, 2009. Vol. 324, nro 3, pp. 600-636.
66. Noponen, Tommi; Nordh, Anders; Berg, Ansgar; Ley, David; Hansson, Stefan R.; Pesonen, Erkki; Fellman, Vineta. Circulatory eccects of inhaled iloprost in the newborn preterm lamb. Pediatric Research, 2009. Vol. 66, nro 4, pp. 416-422.
67. Reijonsaari, Karita; Vehtari, Aki; Van Mechelen, Willem; Aro, Timo; Taimela, Simo. The effectiveness of physical activity monitoring and distance counselling in an occupational health seting - a
research protocol for a randomised controlled trial (CoAct). BMC Public Health, 2009. Vol. 9, p. 494. 68. Smith, DMD; Onnela, Jukka-Pekka; Jones, NS. Master-equation analysis of accelerating networks.
Physical Review E, 2009. Vol. 79, nro 5, 056101.
69. Porter, Mason; Onnela, Jukka-Pekka; Mucha, Peter. Communities in Networks. Notices of the AMS, 2009. Vol. 56, nro 9, pp. 1082-1166.
70. Smith, David; Onnela, Jukka-Pekka; Fan Lee, Chiu; Fricker, Mark; Johnson; Neil. Network Automata: Coupling structure and function in real-world networks. arXiv.org, 2009. pp. 1-7.
2010
1. Jurkko, Raija; Mäntynen, Ville; Lehto, Mika; Tapanainen, Jari M.; Montonen, Juha; Parikka, Hannu; Toivonen, Lauri. Interatrial conduction in patients with paroxysmal atrial fibrillation and in healthy subjects. International Journal of Cardiology, 2010. Vol. 145, nro 3, pp. 455-460.
2. Korhonen, Petri; Husa, Terhi; Konttila, Teijo; Tierala, Ilkka; Mäkijärvi, Markku; Väänänen, Heikki; Ojanen; Teijo, Vehtari, Teijo; Toivonen, Lauri. Fragmented QRS in Prediction of Cardiac Deaths and Heart Failure Hospitalizations after Myocardial Infarction. Annals of Noninvasive Electrocardiology, 2010. Vol. 15, nro 2, pp. 130-137.
3. Häyrynen, Teppo; Oksanen, Jani; Tulkki, Jukka. Derivation of generalized quantum jump operators and comparison of the microscopic single photon detector models. The European Physical Journal D - Atomic, Molecular, Optical and Plasma Physics, 2010. Vol. 56, nro 1, pp. 113-121.
4. Särkkä, Simo. Continuous-Time and Continuous-Discrete-Time Unscented Rauch-Tung-Striebel Smoothers. Signal Processing, 2010. Vol. 90, nro 1, pp. 225-235.
5. Kauramäki, Jaakko; Jääskeläinen, Iiro P; Hari, Riitta; Möttönen, Riikka; Rauschecker, Josef P.; Sams, Mikko. Lipreading and Covert Speech Production Similarly Modulate Human Auditory-Cortex Responses to Pure Tones. The Journal of Neuroscience, 2010. Vol. 30, nro 4, pp. 1314-1321.
6. Kumpula, Linda; Mäkelä, Sanna; Mäkinen, Ville-Petteri; Karjalainen, Anna; Liinamaa, Johanna; Kaski, Kimmo; Savolainen, Markku; Hannuksela, Minna; Ala-Korpela, Mika. Characterization of metabolic interrelationships and in silico phenotyping of lipoprotein particles using self-organizing maps. Journal of Lipid Research, 2010. Vol. 51, nro 2, pp. 431-439.
7. Heikkilä, Oskari; Oksanen, Jani; Tulkki, Jukka. The challenge of unity wall plug efficiency: The effects of internal heating on the efficiency of light emitting diodes. Journal of Applied Physics, 2010. Vol. 107, nro 3, 033105/1-6.
8. Wang, Jade; Nicol, Trent; Skoe, Erika; Sams, Mikko; Kraus, Nina. Emotion and the auditory brainstem response to speech. Neuroscience Letters, 2010. Vol. 469, nro 3, pp. 319-323.
9. Salminen, Nelli; Tiitinen, Hannu; Yrttiaho, Santeri; May, Patrick. The neural code for interaural time difference in human auditory cortex. Journal of the Acoustical Society of America, 2010. Vol. 127, nro 2, pp. 60-65.
10. May, Patrick; Tiitinen, Hannu. Mismatch negativity (MMN), the deviance-elicited auditory deflection, explained. Psychophysiology, 2010. Vol. 47, nro 1, pp. 66-122.
11. Salminen, Nelli; Tiitinen, Hannu; Miettinen, Ismo; Alku, Paavo; May, Patrick. Asymmetrical representation of auditory space in human cortex. Brain Research, 2010. Vol. 1306, pp. 93-99. 12. Penttilä, Paavo; Vrnai, Anik; Leppänen, Kirsi; Peura, Marko; Kallonen, Aki; Jääskeläinen, Pentti; Lucenius, Jessica; Ruokolainen, Janne; Siika-aho; Matti; Viikari, Liisa; Serimaa, Ritva. Changes in Submicrometer Structure of Enzymatically Hydrolyzed Microcrystalline Cellulose.
Biomacromolecules, 2010. Vol. 11, nro 4, pp. 1111-1117.
13. Kotilahti, Kalle; Nissilä, Ilkka; Näsi, Tiina; Lipiäinen, Lauri; Noponen, Tommi; Meriläinen, Pekka; Huotilainen, Minna; Fellman, Vineta. Hemodynamic responses to speech and music in newborn infants. Human Brain Mapping, 2010. Vol. 31, nro 4, pp. 595-603.
14. Mäki, Hanna; Ilmoniemi, Risto. EEG oscillations and magnetically evoked motor potentials reflect motor system exitability in overlapping neuronal populations. Clinical Neurophysiology, 2010. Vol. 121, nro 4, pp. 492-501.
15. Hoikkala, Hanna; Haapalahti, Petri; Viitasalo, Matti; Väänänen, Heikki; Sovijärvi, Anssi; Ylikorkala, Olavi; Mikkola, Tomi. Association between vasomotor hot flashes and heart rate variability in recently postmenopausal women. Menopause, 2010. Vol. 17, nro 2, pp. 315-320.
16. Nieminen, Jaakko O.; Burghoff, Martin; Trahms, Lutz; Ilmoniemi, Risto J. Polarization encoding as a novel approach to MRI. Journal of Magnetic Resonance, 2010. Vol. 202, nro 2, pp. 211-216. 17. Ilmoniemi, Risto J.; Kicic, Dubravko. Methodology for Combined TMS and EEG. Brain Topography,
2010. Vol. 22, nro 4, pp. 233-248.
18. Lehtola, Ville. V.; Linna, Riku P.; Kaski, Kimmo. Unforced polymer translocation compared to the forced case. Physical Review E, 2010. Vol. 81, nro 3, pp. 031803.
19. Schweiger, M.; Dorn, O.; Zacharopoulos, A.; Nissilä, Ilkka; Arridge, S. R. 3D level set reconstruction of model and experimental data in Diffuse Optical Tomography. Optics Express, 2010. Vol. 18, nro 1, pp. 150-164.
20. Miettinen, Ismo; Tiitinen, Hannu; Alku, Paavo; May, Patrick J. C. Sensitivity of the human auditory cortex to acoustic degradation of speech and non-speech sounds. BMC Neuroscience, 2010. Vol. 11, nro 24,
21. Benoit, Margo McKenna; Raij, Tommi; Lin, Fa-Hsuan; Jääskeläinen, Iiro P.; Stufflebeam, Steven. Primary and multisensory cortical activity is correlated with audiovisual percepts. Human Brain Mapping, 2010. Vol. 31, nro 4, pp. 526-538.
22. Andersson, Erika; Stenholm, Stig. Variational properties of a pumped dynamical system. Physical Review A, 2010. Vol. 81, nro 2, 022111.
23. Riihimäki, Jaakko; Sund; Reijo; Vehtari, Aki. Analysing the length of care episode after hip fracture: a nonparametric and a parametric Bayesian approach. Health Care Management Science, 2010. Vol. 13, nro 2, pp. 170-181.
24. Kauppi, J.; Jääskeläinen Iiro, P.; Sams, Mikko; Tohka, J. Inter-subject correlation of brain
hemodynamic responses during watching a movie: localization in space and frequency. Frontiers in Neuroinformatics, 2010. Vol. 4, nro 5.
25. Riihimäki, Jaakko; Vehtari, Aki. Gaussian processes with monotonicity information. In: Journal of Machine Learning Research: Workshop and Conference Proceedings 9. AISTATS2010 special issue 2010, pp. 645-652.
26. Vanhatalo, Jarno; Pietiläinen, Ville; Vehtari, Aki. Approximate inference for disease mapping with sparse Gaussian processes. Statistics in Medicine, 2010. Vol. 29, nro 15, pp. 1580-1607.
27. Näsi, Tiina; Kotilahti, Kalle; Noponen, Tommi; Nissilä, Ilkka; Lipiäinen, Lauri; Meriläinen, Pekka. Correlation of visual-evoked hemodynamic responses and potentials in human brain. Experimental Brain Research, 2010. Vol. 202, nro 3, pp. 561-570.
28. Parviainen, Elina. Reliability of dimension reduction visualizations of hierarchical structures. Esann 2010, Brugge, 24.4.-1.5.2010.
29. Oksanen, Jani; Tulkki, Jukka. Thermophotonic heat pump-a theoretical model and numerical simulations. Journal of Applied Physics, 2010. Vol. 107, nro 9, 093106.
30. Raij, Tommi; Ahveninen, Jyrki; Lin, Fa-Hsuan; Witzel, Thomas; Jääskeläinen, Iiro; Letham, Benjamin; Israeli, Emily; Sahyoun, Cherif; Vasios, Christos; Stufflebeam, Steven; Hämäläinen, Matti; Belliveau, John. Onset timing of cross-sensory activations and multisensory interactions in auditory and visual sensory cortices. European Journal of Neuroscience, 2010. Vol. 31, nro 10, pp. 1772-1782.
31. Matilainen, Laura; Talvitie, Sanna; Pekkonen, Eero; Alku, Paavo; May, Patrick; Tiitinen, Hannu. The effects of healthy aging on auditory processing in humans as indexed by transient brain responses. Clinical Neurophysiology, 2010. Vol. 121, nro 6, 902-911.
32. Talvitie, Sanna; Matilainen, Laura; Pekkonen, Eero; Alku, Paavo; May, Patrick; Tiitinen, Hannu. The effects of cortical ischemic stroke on auditory processing in humans as indexed by transient brain responses. Clinical Neurophysiology, 2010. Vol. 121, nro 6, pp. 912-920.
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2011
1. Ahveninen, Jyrki; Hämäläinen, Matti; Jääskeläinen, Iiro P.; Ahlfors, Seppo P.; Huang, Samantha; Lin, Fa-Hsuan; Raij, Tommi; Sams, Mikko; Vasios, Christos E.; Belliveau, John W. Attention-driven auditory cortex short-term plasticity helps segregate relevant sounds from noise. Proceedings of the National Academy of Sciences of the United States of America, 2011. Vol. 108, nro 10, 4182-4187.
2. Grabarnik, Pavel; Myllymäki, Mari; Stoyan, Dietrich. Correct testing of mark independence for marked point patterns. Ecological Modelling, 2011. Vol. 222, nro 23-24, 3888–3894.
3. Haapalahti, P.; Viitasalo, M.; Perhonen, M.; Väänänen, H.; Mäkijärvi, M.; Swan, H.; Toivonen, L. Comparison of QT peak and QT end interval responses to autonomic adaptation in asymptomatic LQT1 mutation carriers. Clinical physiology and functional imaging, 2011. Vol. 31, nro 3, 209-14 .
4. Häme, Yrjö; Pollari, Mika. Semi-automatic liver tumor segmentation with hidden Markov measure field model and non-parametric distribution estimation. Medical Image Analysis 1361-8415, 2011. 1-10.
5. Hayrynen, Teppo; Oksanen, Jani; Tulkki, Jukka. Dynamics of cavity fields with dissipative and
amplifying couplings through multiple quantum two-state systems. Physical review a, 2011. Vol. 83, nro 1, 013801/1-6.
6. Hayrynen, Teppo; Oksanen, Jani; Tulkki, Jukka. Quantum trajectory model for photon detectors and optoelectronic devices. Physica scripta, 2011. Vol. T143, 014011.
7. Heikkilä, Oskari; Oksanen, Jani; Tulkki, Jukka. Light extraction limits in textured GaN-InGaN light-emitting diodes: Radiative transfer analysis. Applied Physics Letters, 2011. Vol. 99, 161110. 8. Heikkinen, Hanna; Vinberg, Frans; Nymark, Soile, Koskelainen, Ari. Mesopic background lights
enhance dark-adapted cone ERG flash responses in the intact mouse retina: a possible role for gap junctional decoupling. Journal of Neurophysiololy, 2011. 2309-2318.
9. Hekkala, A.M.; Swan, H.; Viitasalo, M.; Väänänen, H.; Toivonen, L. Epinephrine bolus test in
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10. Hietanen, Jari K; Nummenmaa, Lauri. The naked truth: The face and body sensitive N170 reponse is enhanced for nude bodies. PLOS one, 2011. Vol. 6, nro 11, pp. e24408-e24408.
11. Hiltunen, Petri; Särkkä, Simo; Nissilä, Ilkka; Lajunen, Atte; Lampinen, Jouko. State space regularization in the nonstationary inverse problem for diffuse optical tomography. Inverse Problems, 2011. Vol. 27, nro 2, 025009/1-15.
12. Huber, Reto; Mäki, Hanna; Rosanova, Mario; Casarotto, Silvia; Canali, Paola; Casali, Adenauer; Tononi, Giulio; Massimini, Marcello. Human cortical excitability increases with time awake. Cerebral Cortex, 2011. 1-5.
13. Iñiguez, Gerardo; Barrio,Rafael A.; Kertész, János; Kaski, Kimmo K. Modelling opinion formation driven communities in social networks. Computer Physics Communications, 2011. Vol. 182, nro 9, 1866–1869.
14. Iñiguez, Gerardo; Kertész, János; Kaski, Kimmo K.; Barrio, R. A. Phase change in an opinion-dynamics model with separation of time scales . Physical Review E, 2011. Vol. 83, nro 1, 016111. 15. Jääskeläinen, Iiro P. ; Ahveninen, Jyrki; Andermann, Mark L.; Belliveau, John W.; Raij, Tommi; Sams,
Mikko. Short-term plasticity as a neural mechanism supporting memory and attentional functions. Brain Research, 2011. Vol. 1422, 66-81.
16. Jo, Hang-Hyun; Pan, Raj Kumar; Kaski, Kimmo. Emergence of Bursts and Communities in Evolving Weighted Networks. PLoS One, 2011. Vol. 6, nro 8, e22687.
17. Jylänki, Pasi; Vanhatalo, Jarno; Vehtari, Aki. Robust Gaussian Process Regression with a Student-t Likelihood. Journal of Machine Learning Research, 2011. Vol. 12, 3227-3257.
18. Karsai,Márton; Kivelä, Mikko; Pan, Raj Kumar; Kaski, Kimmo; Kertész, János; Barabási, Albert-László; Saramäki, Jari. Small but slow world: how network topology and burstiness slow down spreading. Physical Review , 2011.
19. Kauppi, Jukka-Pekka; Huttunen, Heikki; Korkala, Heikki; Jääskeläinen, Iiro P.; Sams, Mikko; Tohka, Jussi. Face Prediction from fMRI Data during Movie Stimulus: Strategies for Feature Selection. Lecture Notes in Computer Science, 2011. Vol. 6792, 189-196.
20. Korhonen, P.; Hernandez-Pavon, J.; Metsomaa, J.; Mäki, H.; Ilmoniemi, R.J.; Sarvas, J. Removal of large muscle artifacts from transcranial magnetic stimulation-evoked EEG by independent
component analysis. Medical and Biological Engineering and Computing 0140-0118, 2011. Vol. 49, nro 4 , 397-407.
21. Kovanen, Lauri; Karsai, Márton; Kaski, Kimmo; Kertész, János; Saramäki, Jari. Temporal motifs in time-dependent networks. Journal of Statistical Mechanics: Theory and Experiment, 2011. P11005. 22. Kumar, Vibhor; Butcher, Sarah J.; Öörni, Katariina; Engelhardt, Peter; Heikkonen, Jukka; Kaski,
Kimmo; Ala-Korpela, Mika; Kovanen, Petri T. Three-Dimensional cryoEM Reconstruction of Native LDL Particles to 16Å Resolution at Physiological Body Temperature. PLoS One, 2011. Vol. 6, nro 5, e18841.
23. Lancichinetti, Andrea; Fortunato, Santo. Limits of modularity maximization in community detection. Physical Review E, 2011. Vol. 84, 066122.
24. Liou, Shr-Tai; Witzel, Thomas; Numenmaa, Aapo; Chang, Wei-Tang; Tsaic, Kevin Wen-Kai; Kuoe, Wen-Jui; Chunga, Hsiao-Wen; Lin, Fa-Hsuan. Functional magnetic resonance inverse imaging of human visuomotor systems using eigenspace linearly constrained minimum amplitude (eLCMA) beamformer. NeuroImage, 2011. Vol. 55, nro 1, 87–100.
25. Luomahaara, Juho; Vesanen, Panu, T.; Penttilä, Jari, S.; Nieminen, Jaakko, O.; Dabek, Juhani; Simola, Juha.; Kiviranta, Mikko.; Grönberg, Leif.; Zevenhoven Koos, C. J.; Ilmoniemi, Risto, J.; Hassel, Juha. All-planar SQUIDs and pickup coils for combined MEG and MRI. Superconductor Science and Technology, 2011. Vol. 24, nro 7, 075020/1-7.
26. Luong, Nguyen Dang; Hippi, Ulla; Korhonen, Juuso T.; Soininen, Antti J.; Ruokolainen, Janne; Johansson, Leena-Sisko; Nam, Jae-Do, Sinh, Le Hoand, Seppälä, Jukka. Enhanced mechanical and electrical properties of polyimide film by graphene sheet via in situ polymerization. Polymer, 2011. Vol. 52, pp. 5237-5242.
27. Mahalka, Ajay K.; Code, Christian; Rezaijahromi, Behnam; Kirkegaard, Thomas; Jäättelä, Marja; Kinnunen, Paavo K.J. Activation of phospholipase A2 by Hsp70 in vitro. Biochimica et Biophysica Acta (BBA) - Biomembranes, 2011. Vol. 1808, nro 10, 2569–2572.
28. Mahalka, Ajay K.; Maury, C. Peter; Kinnunen, Paavo K.J. 1-Palmitoyl-2-(9′-oxononanoyl)-sn-glycero-3-phosphocholine, an Oxidized Phospholipid, Accelerates Finnish Type Familial Gelsolin Amyloidosis in Vitro. Biochemistry, 2011. Vol. 50, nro 27, 4877-4889.
29. Marttinen, Pekka; Hanage, William P.; Croucher, Nicholas J.; Connor, Thomas R.; Harris, Simon R.; Bentley, Stephen D.; Corander, Jukka. Detection of recombination events in bacterial genomes from large population samples. Nucleic Acids Research, 2011. Vol. 40, nro 1, e6.
30. Näsi, Tiina; Kotilahti, Kalle; Mäki, Hanna; Nissilä, Ilkka; Haapalahti, P.; Ilmoniemi, Risto. Magnetic-Stimulation-Related Physiological Artifacts in Hemodynamic Near-Infrared Spectroscopy Signals. 2011. PLoS ONE 6(8): e24002. doi:10.1371/journal.pone.0024002
31. Näsi, Tiina; Virtanen, Jaakko; Noponen, Tommi; Toppila, Jussi; Salmi, Tapani; Ilmoniemi, Risto, J. Spontaneous Hemodynamic Oscillations during Human Sleep and Sleep Stage Transitions Characterized with Near-Infrared Spectroscopy. 2011. Elektroninen julkaisu
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32. Nguyen, Dang Luong; Pahimanolis, Nikolaos; Hippi, Ulla, Korhonen, Juuso T.; Ruokolainen, Janne; Johansson, Leena-Sisko; Nam, Jae-Do; Seppälä, Jukka. Graphene/cellulose nanocomposite paper eith high electrical and mechanical performances. Journal of materials chemistry, 2011. Vol. 21, pp. 13991-13998.
33. Nieminen, Jaakko, O.; Vesanen, Panu, T.; Zevenhoven, Koos, C. J.; Dabek, Juhani; Hassel, Juha; Luomahaara, Juho; Penttilä, Jari S.; Ilmoniemi, Risto, J. Avoiding eddy-current problems in ultra-low-field MRI with self-shielded polarizing coils. Journal of Magnetic Resonance 1090-7807, 2011. Vol. 212, nro 1, 154-160.
34. Noseworthy, P. A.; Tikkanen, J. T.; Porthan, K.; Oikarinen, L.; Pietilä, A.; Harald, K.; Peloso, G.M.; Merchant, F. M.; Jula, A.; Väänänen, H.; Hwang, S.J.; O'Donnell, C.J.; Salomaa, V.; Newton-Cheh, C.; Huikuri, H.V. The early repolarization pattern in the general population: clinical correlates and heritability. Journal of the American College of Cardiology, 2011. Vol. 57, nro 22, 2284-9. 35. Pahimanolis, Nikolaos; Hippi, Ulla; Johansson, Leena-Sisko; Tapio, Saarinen; Houbenov, Nikolay;
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36. Pan, Raj Kumar; Saramäki, Jari. Path lengths, correlations, and centrality in temporal networks. Physical Review, 2011 .
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38. Payne, Stephen; Flanagan, Ronan; Pollari, Mika; Alhonnoro, Tuomas; Bost, Claire; O'Neill, David; Peng, Tingying; Stiegler, Philipp. Image-based multi-scale modelling and validation of
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39. Rahko, Jukka S.; Paakki, Jyri-Johan; Starck, Tuomo H.; Nikkinen, Juha; Pauls, David L.; Kätsyri, Jari V.; Jansson-Verkasalo, Eira M.; Carter, Alice S.; Hurtig, Tuula M.; Mattila, Marja-Leena; Jussila, Katja K.; Remes, Jukka J.; Kuusikko-Gauffin, Sanna A.; Sams, Mikko E.; Bölte, Sven; Ebeling, Hanna E.;
Moilanen, Irma K.; Tervonen, Osmo; Kiviniemi, Vesa. Valence Scaling of Dynamic Facial Expressions is Altered in High-Functioning Subjects with Autism Spectrum Disorders: an fMRI Study. Journal of Autism and Developmental Disorders, 2011. 1-14.
40. Rantonen,Jorma; Luoto, Satu; Vehtari, Aki; Hupli, Markku; Karppinen, Jaro; Malmivaara, Antti; Taimela, Simo. The effectiveness of two active interventions compared to self-care advice in employees with non-acute low back symptoms. A randomised, controlled trial with a 4-year follow-up in the occfollow-upational health setting. Occfollow-upational and Environmental Medicine, 2011.
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60. Volinsky,Roman; Cwiklik, Lukasz; Jurkiewicz, Pjotr; Hof, Martin Jungwirth, Pavel; Kinnunen, Paavo K. J. Oxidized Phosphatidylcholines Facilitate Phospholipid Flip-Flop in Liposomes. Biophysical Journal, 2011. Vol. 101, nro 6, 1376-1384.
61. Waller, Lance A.; Särkkä, Aila; Olsbo, Viktor; Myllymäki, Mari;Panoutsopoulou, Ioanna G.; Kennedy, William R.; Wendelschafer-Crabb, Gwen. Second-order spatial analysis of epidermal nerve fibers. Statistics in Medicine, 2011. Vol. 30, nro 23, 2827–2841.
62. Zhang, Weikai; Zhang, Ya; Sood, Rohit; Ranjan, Sanjeev; Surovtseva, Elena; Ahmad, Aqeel; Kinnunen, Paavo K. J.; Pyykkö, Ilmari; Zou, Jing. Visualization of intracellular trafficking of Math1 protein in different cell types with a newly-constructed nonviral gene delivery plasmid. The Journal of Gene Medicine, 2011. Vol. 13, nro 2, 134-144.
63. Zhao, Kun; Karsai, Márton; Bianconi, Ginestra. Entropy of Dynamical Social Networks. PLoS One, 2011. Vol. 6, nro 12, e28116.
Lauri Parkkonen’s publications in 2009-2011 Publications in peer-reviewed scientific journals
1. G. Sudre, L. Parkkonen, E. Bock, S. Baillet, W. Wang, and D. Weber. rt-MEG: A real-time software interface for magnetoencephalography. Computat. Intellig. and Neurosci., 327953, 2011. 2. P. Ramkumar, L. Parkkonen, R. Hari, and A. Hyvärinen. Characterization of neuromagnetic brain
rhythms over time scales of minutes using spatial independent component analysis. Hum. Brain Mapp., Sep 13 2011, epub ahead of print.
3. M. Pannetier-Lecoeur, L. Parkkonen, N. Sergeeva–Chollet, H. Polovy, C. Fermon, and C. Fowley. Magnetocardiography with sensors based on giant magnetoresistance. Appl. Phys. Lett., 98:153705, 2011.
4. R. Hari, L. Parkkonen, and C. Nangini. Brain in Time: Insights from neuromagnetic recordings. Year Cogn. Sci., Ann. New York Acad. Sci., 1191(1):89–109, 2010.
5. A. Hyvärinen, P. Ramkumar, L. Parkkonen, and R. Hari. Independent Component Analysis of short-time Fourier transforms for spontaneous EEG/MEG analysis. Neuroimage, 49(1):257–271, 2010. 6. P. Ramkumar, L. Parkkonen, and R. Hari. Oscillatory response function: Towards a parametric
model of rhythmic brain activity. Hum. Brain Mapp., 31(5):820–34, 2010.
7. M. Kujala, T. Tanskanen, L. Parkkonen, and R. Hari. Intensity of facial expression of pain modifies observer’s late STS responses. Hum. Brain Mapp., 30(12):3910–23, 2009.
8. L. Parkkonen, N. Fujiki, and J. Mäkelä. Sources of auditory brainstem responses revisited: Contribution by magnetoencephalography. Hum. Brain Mapp., 30(6):1772–82, 2009.
9. Sorrentino, L. Parkkonen, A. Pascarella, C. Campi, and M. Piana. Dynamical MEG source modeling with multi-target Bayesian tracking. Hum. Brain Mapp., 30(6):1911–21, 2009.
10. M. Liljeström, A. Hulten, L. Parkkonen, and R. Salmelin. Comparing MEG and fMRI views to naming actions and objects. Hum. Brain Mapp., 30(6):1845–56, 2009.
11. V. von Pföstl, L. Stenbacka, S. Vanni, L. Parkkonen, C. Galletti, P. Fattori. Motion sensitivity of human V6: a magnetoencephalography study. NeuroImage, 45(4):1253–63, 2009
Scientific books and book chapters
1. L. Parkkonen. Instrumentation and data preprocessing. In M. Kringelbach, P. Hansen and R. Salmelin (eds) MEG: An Introduction to Methods, pages 24–64. Oxford University Press, New York, 2010. ISBN: 978-0-19-530723-8.
2. L. Parkkonen and R. Salmelin. Measurements. In M. Kringelbach, P. Hansen and R. Salmelin (eds) MEG: An Introduction to Methods, pages 65–74. Oxford University Press, New York, 2010. ISBN: 978-0-19-530723-8.
3. R. Salmelin and L. Parkkonen. Experimental Design. In M. Kringelbach, P. Hansen and R. Salmelin (eds) MEG: An Introduction to Methods, pages 75–82. Oxford University Press, New York, 2010. ISBN: 978-0-19-530723-8.
Publications in Conference Proceedings
1. L. Helle, S. Taulu, and L. Parkkonen. Boosting the Detection of Gammaband Responses in Multichannel MEG Recordings. Abstract in the Human Brain Mapping conference, June, 2011. 2. P. Ramkumar, A. Hyvärinen, L. Parkkonen, and R. Hari. Characterization of spontaneous
neuromagnetic brain rhythms using independent component analysis of short-time Fourier transforms. In S. Supec and A. Susac (eds) 17th Intl. Conf on Biomagnetism. Adv. in Biomagnetism. Biomag 2010., Springer, 2010. ISBN: 978-3-642-12196-8.
3. J. Nenonen, L. Helle, S. Taulu, L. Parkkonen, and A. Ahonen. Repeatability of AEF and SEF from static and moving head positions. In S. Supec and A. Susac (eds) 17th Intl. Conf on Biomagnetism. Adv. in Biomagnetism. Biomag 2010., Springer, 2010. ISBN: 978-3-642-12196-8.
4. J. Nenonen, J. Nurminen, D. Kicic, R. Bikmullina, P. Lioumis, V. Jousmäki, S. Taulu, L. Parkkonen, M. Putaala, and S. Kähkönen. Correction of Disturbances Caused by Temporary and Continuous Head Movements. In S. Supec and A. Susac (eds) 17th Intl. Conf on Biomagnetism. Adv. in Biomagnetism. Biomag 2010., Springer, 2010. ISBN: 978-3-642-12196-8.
5. J. Wilenius, A. Zhdanov, E. Larismaa, L. Parkkonen, M. Kajola, J. Lyytinen, A. Ahonen, O.
Miikkulainen, J.P. Mäkelä, and R. Paetau. Video-MEG: Integration of digital video to MEG epilepsy recordings. In S. Supec and A. Susac (eds) 17th Intl. Conf on Biomagnetism. Adv. in Biomagnetism. Biomag 2010., Springer, 2010. ISBN: 978-3-642-12196-8.
6. J.T. Becker, G. Sudre, M. Fabrizio, L. Parkkonen, A. Haridis, and A. Bagic. Utilization of
Magnetoencephalography for the Detection of Central Nervous System Dysfunction in HIV Disease. In S. Supec and A. Susac (eds) 17th Intl. Conf on Biomagnetism. Adv. in Biomagnetism. Biomag 2010., Springer, 2010. ISBN: 978-3-642-12196-8
7. E. Karp, L. Parkkonen, and R. Vigario. Denoising Single Trial Event Related Magnetoencephalographic Recordings. Independent Component Analysis, 2009. Santo Fortunato’s publications in 2009-2011
1. Castellano, Claudio; Fortunato, Santo; Loreto, Vittorio. Statistical physics of social dynamics. Reviews of Modern Physics 81, 591-646 (2009).
2. Eom, Young-Ho; Fortunato, Santo. Characterizing and modeling citation dynamics. PLoS One 6, e24926 (2011).
3. Fortunato, Santo. Community detection in graphs. Physics Reports 486, 75-174 (2010).
4. Fortunato, Santo; Boguñá, Marian; Flammini, Alessandro; Filippo Menczer. On Local Estimations of PageRank: a Mean Field Approach Internet Mathematics 4, 245-266 (2009).
5. Fortunato, Santo; Radicchi, Filippo. Explosive percolation in graphs. Journal of Physics: Conference Series 297, 012009 (2011).
6. Lancichinetti, Andrea; Fortunato, Santo. Benchmark for testing community detection algorithms on directed and weighted graphs with overlapping communities. Physical Review E 80, 016118 (2009).
7. Lancichinetti, Andrea; Fortunato, Santo. Community detection algorithms: a comparative analysis. Physical Review E 80, 056117 (2009).
8. Lancichinetti, Andrea; Fortunato, Santo. Limits of modularity maximization in community detection. Physical Review E 84, 066122 (2011).
9. Lancichinetti, Andrea; Fortunato, Santo; Kertész, Janos. Detecting the overlapping and hierarchical community structure of complex networks . New Journal of Physics 11, 033015 (2009).
10.Lancichinetti, Andrea; Kivelä, Mikko; Saramäki, Jari; Fortunato, Santo. Characterizing the community structure of complex networks. PLoS One 5, e11976 (2010).
11.Lancichinetti, Andrea; Radicchi, Filippo; Ramasco, José Javier. Finding statistically significant communities in networks. PLoS One 6, e18961 (2011).
12.Mandrà, Salvatore; Fortunato, Santo; Castellano, Claudio. Coevolution of Glauber-like Ising dynamics and topology. Physical Review E 80, 056105 (2009).
13.Mazloumian, Amin; Eom, Young-Ho; Helbing, Dirk; Lozano, Sergi; Fortunato, Santo. How citation boosts promote scientific paradigm shifts and Nobel Prizes. PLoS One 6, e18975 (2011).
14.Radicchi, Filippo; Barrat, Alain; Fortunato, Santo; Ramasco, José Javier. Renormalization flows in complex networks. Physical Review E 79, 026104 (2009).
15.Radicchi, Filippo; Fortunato, Santo. Explosive percolation in scale-free networks. Physical Review Letters 103, 168701 (2009).
16.Radicchi, Filippo; Fortunato, Santo. Explosive percolation: a numerical analysis. Physical Review E 81, 036110 (2010).
17.Radicchi, Filippo; Fortunato, Santo; Markines, Benjamin; Vespignani, Alessandro. Diffusion of scientific credits and the ranking of scientists. Physical Review E 80, 056103 (2009).
18.Radicchi, Filippo; Ramasco, José Javier; Fortunato, Santo. Information filtering in complex weighted networks. Physical Review E 83, 046110 (2011).
19.Ratkiewicz, Jacob; Fortunato, Santo; Flammini, Alessandro; Menczer, Filippo; Vespignani,
Alessandro. Characterizing and modeling the dynamics of online popularity. Physical Review Letters 105, 158701 (2010).
20.Ratkiewicz, Jacob; Fortunato, Santo; Flammini, Alessandro; Menczer, Filippo; Vespignani,
Alessandro. Traffic in Social Media II: Modeling Bursty popularity. Proceedings of SocialCom 2010, Symposium on Social Intelligence and Networking (SIN-10).
Paavo Kinnunen’s publications in-2009-2010
1. Alakoskela J-M, Parry M, Kinnunen PKJ: The intermediate state of DMPG Is stabilized by enhanced positive spontaneous curvature. Langmuir, 26, 4892–4900, 2010.
2. Alakoskela J-M, Vitovic P, Kinnunen PKJ: Screening for the drug-phospholipid interaction: correlation to phospholipidosis. ChemMedChem, 4, 1224-1251, 2009.
3. Borges MBD, dos Santos CG, Yokomizu CH, Sood R, Vitovic P , Kinnunen PKJ, Rodrigues T, Iseli L. Nantes IL: Characterization of hydrophobic interaction and antioxidant properties of the
phenothiazine nucleus in mitochondrial and model membranes. Free Radical Research, 44, 1054-63, 2010.
4. Code C, Domanov Y, Killian JA, Kinnunen PKJ: Activation of phospholipase A2 by temporin B: formation of antimicrobial peptide-enzyme amyloid-type cofibrils. Biochim.Biophys.Acta, 1788, 1064-72, 2009.
5. Code C, Mahalka AK, Bry K, Kinnunen PKJ: Activation of phospholipase A2 by 1-palmitoyl-2-(9’-oxo-nonanoyl)-sn-glycero-3-phosphocholine in vitro. Biochim.Biophys.Acta 1798, 1593–1600, 2010. 6. Kinnunen PKJ, Domanov YA, Mattila JP, Varis T: Formation of lipid/peptide tubules by IAPP and
temporin B on supported lipid membranes. Soft Matter, in press.
7. Kinnunen PKJ: Amyloid formation on lipid membrane surfaces. The Open Biology Journal, 2, 163-175, 2009.
8. Kirkegaard T, Roth A, Petersen NHT, Mahalka AK, Olsen OD, Moilanen I, Zylicz A, Grüenberg J, Knudsen J, Arenz C, Sandhoff K, Kinnunen PKJ, Nylandsted J, Jäättelä: Lysosomal Hsp70 activates acid sphingomyelinase, stabilizes lysosomes and reverts Niemann-Pick disease-associated lysosomal pathology. Nature, 463, 549-554, 2010.
9. Mahalka AK, Kinnunen PKJ: Binding of amphipathic alpha-helical antimicrobial peptides to lipid membranes. Lessons from temporins B and L. Biochim.Biophys.Acta, 1788, 1600-1609, 2009. 10.Parry MJ, Hagen M, Mouritsen OG, Kinnunen PKJ, Alakoskela JMI: Interlamellar coupling of
phospholipid bilayers in liposomes: An emergent property of lipid rearrangement. Langmuir, 26, 4909–4915, 2010
11.Saarikangas J, Zhao H, Pykäläinen A, Laurinmäki P, Mattila PK, Kinnunen PKJ, Butcher SJ,
Lappalainen P: Molecular mechanisms of membrane deformation by I-BAR domain proteins, Curr. Biol., 19, 95-107, 2009.
12.Trusova V, Gorbenko G, Molotkovsky JT, Kinnunen PKJ: Cytochrome c-lipid interactions: new insights from resonance energy transfer. Biophys. J., 99, 1754-1763, 2010.
13.Zou J, Sood R, Ranjan S, Poe D, Ramadan UA, Kinnunen PKJ, Pyykkö I: Manufacturing and in vivo inner ear visualization of MRI traceable liposome nanoparticles encapsulating gadolinium. J.Nanobiotechnology, 8, 32-43, 2010.