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Inference of Infectious Disease Dynamics from Genetic Data via Sequential Monte Carlo

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Figure

Figure 2.1: A schematic of the possible infection statuses for individuals. The per capita birth rate of susceptible individuals is the same as the per capita death rate, µ, such that on average the total population remains constant
Table 2.1: Parameters of the transmission model used in simulation of datasets.
Table 2.2: Parameters of the genetic model used in simulation of datasets.
Figure 2.2: Components of an SIR epidemic, simulated and estimated. Panel A shows a simulated trajectory of infected individuals
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