Expression of Sry-related genes in the developing genital ridge/mesonephros of the chick embryo
D. McBride, H. Sang and M. Clinton
Division
of Development
andReproduction,
RoslinInstitute(Edinburgh), Roslin,
MidlothianEH25 9PS, UK
A reverse
transcription-polymerase
chain reactionapproach
was used in anattempt
toidentify
achickhomologue
toSry.
Genetranscripts
from thegenital ridge
wereanalysed
atthe
stage
ofdevelopment
at which theexpression
of such a genemight
beexpected.
Anumber of
Sry-related
genesexpressed
in thedeveloping genital ridge
of the chick wereidentified.
Introduction
During embryonic development,
the actions ofregulatory
genes commit the undifferentiated cells of the
genital ridge along
the testicularor ovarianpathway.
The generesponsible
for testis determination in mammals has been identified
(Gubbay
etal,
1990;Sinclairetal, 1990;Koopman
etal,
1991).Inmice, thisgene is
designated Sry
forSexdetermining region,
Y-chromosome. The
Sry protein
containsaDNA-binding
motifknown as the
HMG-box,
found ina widevariety
ofproteins
that bindto DNAwith different
degrees
ofsequencespecificity
(Nasrinet
al,
1991;Harley
etal,
1992;Riminietal, 1995).Thisregion
ishighly
conserved in all mammalianSry
genessequenced
to date, whilesequences outside the HMG-boxarevery
poorly
conserved between mammalianspecies (Laudet
et
al,
1993;Payen
and Cotinot, 1993; Tucker andLundrigan,
1993; Whitfield et al, 1993; Tucker and
Lundrigan,
1995).Homologues
of theSry
gene arepresent
in all mammalianspecies
sofar examined butnonehave yetbeenidentified in anon-mammalian
species.
In
birds,
the female isheterogametic
withregard
to sexchromosomes, with one chromosome and one W chromo¬
some. It would therefore seem
unlikely
that an identicalsex-determining
system couldoperate
inbirds and mammals.However, it is
possibile
thatanavianhomologue
toSry
couldactas a
testis-determining
geneifitsexpression
wastriggered by
a different mechanism from thatseeninmammals. The aim ofthisstudy
wastoidentify
anavianhomologue
toSry.
Otherworkers have
attempted
such studiesusing approaches
basedonthe
polymerase
chain reaction (PCR).These studies involve PCRamplification using genomic
DNAastemplate,
and,whileunsuccessful at
identifying
an avianhomologue
ofSry,
anumberofaviansequencesof
Sry-related
(Sox)geneshave beenreported (Griffiths,
1991; Coriat etal,
1993). In contrast, a reversetranscription-PCR approach
was usedto examinegenetranscripts
in the chickgenital ridge
at the time ofgonadal differentiation,
that is, at a time and location that an avianR5 05
R3
Fig.1.Schematicrepresentationofmouse Sry(a)and humanSRY(b)
demonstrating
relativepositionsof PCRprimers,R5,05 andR3(—).HMG-box regionofprotein.
homologue
ofSry might
beexpected
to beexpressed (Koopman
etal,
1990). Combinations ofdegenerate
PCRprimers
based onthesequences ofanumber of mammalianSry
genes were used.
Theaimof this
study
wastoidentify
anumber ofsequences of Sn/-related genes, some of whichcorrespond
to aviansequences
reported
in earlier studies. One of these sequencescorresponded
to the avianhomologue
of SOX-9, a generecently implicated
in sex reversal andchondrogenesis
inmammals(Fosteretal, 1994;
Wagner
etal, 1994;Wright
etal, 1995). This sequencehas been used to isolate agenomic
clone forchicken SOX-9.Materials and Methods Materials
Degenerate
PCRprimers
weredesigned
based on thepublished
sequences of mammalianSry
genes. Primerswere R5-GTG/CAAGCGACCCATGAATTCA/TTTT/CATC/
GGTG/ATGGT,
R3-ATCTTCGAATTCCGAC/TGAGGTT/CGA/GTAT/CTTG/ATA and 05-AGA/GTGGCT/CCT/AA/
GG/CAGAATTCCAG/AA/CATG. Primers
correspond
tonucleotidesat
positions
7-40(R5), 208-239(R3)and59-84(05)
of the HMG Box of the mouseSry
gene (Fig.
1). For easeof
subcloning, primers
weredesigned
to include an EcoRlrestrictionenzyme site.
""Correspondence.
Received7June1996.
1. CCCAGGCGGC TCGAAGGAAG CTGGCTGACC AGTACCCGCA TCTGCACAAC GCCGAGCTCA GCAAGACGCT GGGCAAGCTG TGGAGGCTGC TGAATGAGAG CGAGAAGCGT CCCTTCGTGG AGGAGGCCGA GCGGCTGCGG GTGCAGCACA AGAAGGACCA CGCCGAC
2. TCTAAGATCG AGAGGAGAAA AATCATGGAG CAGTCGCCGG ACATGCACAA CGCGGAGATC TCCAAGCGCC TGGGCAAGCG GTGGAAAATG CTGAAGGACA GCGAGAAGAT CCCCTCCATC CGGGAGGCGG AGAGGCTGCG GCTCAAGCAC ATGGCCGATT ACQCCGAC
3. TCCCGGGGCC AGCGCGGCAA GATGGCACAG GAGAACCCCA AAATGCACAA CTCGGAAATC AGCAAGCGGC TGGGCGCGGA GTGGAAGCTG CTCTCCGAGG CGGAGAAGCG GCCCTACATC GACGAGGCCA AGCGGCTGCG GGCGCAACAC ATGAAGGAAC ACQCCGAC
4. TCCCGGGGCC AGCGGCGGAA GATGGCCCAG GAGAATCCCA AGATGCACAA CTCGGAGATC AGCAAGCGCC TCGGGGCCGA TTGGAAGCTG CTGAGCGATG CCGAGAAGCG GCCCTTCATC GACGAGGCCA AGAGGCTGCG GGCCGTGCAC ATGAAGGAGT ACCCGGAT
5. TCGCAGCACG AGCGCCGCAA GATCATGGAC CAGTGGCCCG ACATGCACAA CGCCGAGATC TCCAAGCGCC TGGGTCGGCG CTGGCAGCTC CTGCACGACT CCGAGAAGAT CCCCTTTGTG AAGGAGGCCG AGCGCCTGCG CGTCAAGCAC ATGGCCGACT ACCCCGAC
6. TCGCAGATCG AACGGCGGAG GATCATGGAG CAGTCGCCCG ACATGCACAA CGCCGAGATC TCCAAGCGGC TGGGCAAGCG CTGGAAGCTG CTCAAGGACA GCGACAAGAT CCCCTTCATC CGGGAGGCGG AGCGGCTGCG CCCTCAAGCA CATGGCGGAC TACCCCGAC
Fig. 2. Nucleotidesequences ofrepresentativeclones from thesix groupsof PCR-derived clones
(PCR-primer
sequences are notshown).
cDNA
synthesis
ISA-Brown eggs from commercial hens were incubated, on the
day
oflay
at 38°C±0.5°C. After 5, 6 and 7days
ofincubation
embryos
(50 perday)
were isolated andplaced
insterile Petridishesfor dissection of
genital ridges/mesonephros.
RNA extracted from dissected tissues, from both male and female
embryos,
was combined and cDNA wassynthesized using
acommercially
available firststrand cDNAsynthesis
kit(Pharmacia
Biotech, StAlbans).
PCR
PCR reactions were
performed
on cDNAtemplates using primer
combinationsR5 with R3, and 05 with R3.PCR reactions were
performed
in 50µ
of 10mmol Tris—HC1
l"1,
1.5 mmolMgCl2
1"\
50mmol KC1I"1,
0.1 mg ml~
'
gelatine, pH
8.3,containing
200µ
dNTPs 1~\
1
µ primers
1~ and 1 unit ofTaq polymerase (Boehringer
Table 1. Number of individual clones in each group of
Sry-related
sequencesSequence
Number ofgroup individual clones
1 21
2 19
3 11
4 1
5 3
6 4
Mannheim UK, Lewes). After an initial denaturation
step
of 94°C for 2min, DNA was denatured at 94°C for 1min, annealed at 60°C for 2 min and extended at 72°C for 2 min.Reactions were
subjected
to 30cycles
ofamplification
andSQAARRKLAD QYPHLHNAEL SKTLGKLWRL LNESEKRPFV EEAERLRVQH KKDHPDYK Group 1
+::::::::: :::::::::: :::::::::: :::::::::: :::::::::: :::
AQAARRKLAD QYPHLHNAEL SKTLGKLWRL LNESEKRPFV EEAERLRVQH KKD MouseSox-9
SKIERRKIME QSPDMHNAEI SKRLGKRWKM LKDSEKIPFI REAERLRLQH MADYPDYK Group2
:::::::::: :::::::::: :::::::::: :::::::::: ::::::::+: ::::::
SKIERRKIME QSPDMHNAEI SKRLGKRWKM LKDSEKIPFI REAERLRLKH MADYPD Human SOX-11
SRGQRGKMAQ ENPKMHNSEI SKRLGAEWKL LSEAEKRPYI DEAKRLRAQH MKEHPDYK Group3 SRGQRRKMAQ ENPKMHNSEI SKRLGAEWKL LSEAEKRPYI DEAKRLRAQH MKE MouseSox-14 SRGQRRKMAQ ENPKMHNSEI SKRLGADWKL LSDAEKRPFI DEAKRLRAVH MKEYPDYK Group4
::::::::: :::::::::: :::::::::: :+:::::::: :::::::::: ::::::::
SRGQRRKMAL ENPKMHNSEI SKRLGADWKL LTDAEKRPFI DEAKRLRAVH MKEYPDYK Human SOX-3 SQHERRKIMD QWPDMHNAEI SKRLGRRWQL LHDSEKIPFV KEAERLRVKH MADYPDYK Group5
:::::::::: :::::::::: :::::::::: : ::::::: +::::::+:: :::
SQHERRKIMD QWPDMHNAEI SKRLGRRWQL
LÇpSEKIPFE
REAERLRLKH MAD MouseSox-12SQIERRKLME QSPDMHNAEI SKRLGKRWKL LKDSDKIPFI REAERLRLKH MADYPDYK Group6 SQIERRKJME QSPDMHNAEI SKRLGKRWKL LKDSDKIPFI REAERLRLKH MADYPDYK HumanSOX-4
Fig. 3. Predicted amino acid sequences of chicken Sox transcripts
compared
with protein sequences of mammalianhomologues.
Blanks indicatenon-conservative substitutions; +, conservativesubstitutions; and:,identical amino acids.
then a final extension
step
at 72°C for 5 min. PCRproducts
were
separated
on a 1.0% agarosegel
and bands visualized under UVlight
after ethidium bromidestaining
(Maniatis etal, 1982).PCR
products
weregel purified, digested
with EcoRl andsubclonedinto
Bluescript
KSM13(Stratagene
Ltd,Cambridge).
Competent
Escherichia coli JM109 cells were transformed andplated
on Luria-Bertani(LB)-ampicillin plates.
Transformant clones were
picked
andculturedovernight
inLB medium
containing ampicillin.
Sequencing
Plasmid DNA was
prepared using commercially
available reagents(Qiagen
Ltd,Dorking)
andsequenced by
thedideoxy
chain termination method using a
Sequenase
kit (AmershamInternational
pic, Slough). Sequences
werecompared
againstinternational nucleotide and
protein
databasesusing
the Blastpackage
ofanalysis
programmes(Altschul
etal, 1990).Genomic
clones
Achick
genomic library
in lambdaEMBL-3 wasplated
onE.colistrainNM621 and screened
using
theprotocol
ofManiatiset al (1982). Purified insert from PCR clone
pBS-cSOX9
waslabelled
using
theReady-To-Go
kit(Pharmacia Biotech)
foruseas
probe.
DNA frompositive
EMBL-3 clones was used astemplate
in PCR reactionsusing primers
R5 and R3. Theresulting
PCRproduct
waspurified
on agel,
subcloned intoBluescript
KS M13 andsequenced.
Table 2.
Degree
ofidentity
of chick sequences with mostclosely
related mammalian sequenceNucleotide Aminoacid
Chick sequence (%) (%)
cSox-9 90 98
cSox-11 90 98
cSox-14 86 98
cSox-3 86 96
cSox-12 88 92
cSox-4 93 100
Results
Reverse
transcription-PCR
was used to examineSry-related transcripts
in thegenital ridge/mesonephros
ofdeveloping
chick
embryos.
The twoprimer
combinations were used and PCRproducts
of theexpected
sizes, 233bp
and 181bp,
wereobtained.PCR
products
weredigested
withEcoRl,get purified
and subcloned into
Bluescript
KS M13. A total of 60 cloneswas
analysed
and the sequencesfellintosixgroupsof identical clones(Table
I).Nucleotide sequencesofrepresentative
clonesfrom each group are shown
(Fig.
2). The sequence of each groupof cloneswascompared
with that of mammalianSry
andSox genes.
Although
overall,Sry
genes arepoorly
conservedbetween
species,
the HMG-boxregions
of individual Sox genes,including Sry,
show ahigh degree
of conservation(Griffiths,
1991; Coriat et al, 1993; Laudet etal, 1993;Payen
and Cotinot, 1993; Tucker and
Lundrigan,
1993;Whitfieldet
al,
1993).On thisbasis, the sequences obtainedinI CCCAGGCGGC
TCGAAGGAAG CTGGCTGACC AGTACCCGCA TCTGCACAAC 51 GCCGAGCTCA GCAAGACGCT GGGCAAGCTG TGGAGGTGAGCGGGAGGTGG
101 GAGCGATGCC TGGGGTGGGC GGGGGGACGC AGCCTGCAGA GTTTGCTCCG 151 GCTGTGACGC GCGAGGAGGA GAGAGGAAAG GGAGGGAGAG GATGGTTGGA201
AGCCTGGAAA AGTTGCCGCA AAGTTTTGCA TGCGCTGGCA AAGTTGTTCG 251 GCGGAATAGG AGGGGGAGAG CAGGGCAAGG AGAGCCTGGG CTGCCCTCTG 301 CTCCTGCAAA AGGTTTTATG CTGCTTGAGC CGTGCCCTGT GTGTGCTGCA 351 GCCGGGGGAG CGCTTGGTGA TTGTGCAGGG GAAGCGATGG GCCTAGATTG 401 CATCAGCTCT GTGCAGAGCG AGGGGAGGGG GCAAAAGCTG CCAACCCCCG 451 GGTGGGTGCC CAGGGGCGGC TGGGTGCCCT CCGCCTTCCA AAATAAGGCA 501 GGGAGGGGTG AAAATCAGGA GGCAAGTGAG TCACCTGGCT GCCAATGAGT 551 GTGACTGCAG AAAGGAGGGG CGGAGGGGAA TCCTAAATCC ACAGCGGGAG 601 GAGAAAGTGG TGAGCAACTC TGGTCCTGGC AGCCGGCGCG AGAGCCGTCA 651 CCCACAGTGC CCGGGGATGG GGGAGCTGAG GAGCACTGTGCTCTCACACC
701 TCTCGTTTGG TCATTGAAAC GCGGGGTGTC AACCAGCATG TGCCCCAAAG 751 TGAGGGTTCA GTGCTGGAAG GGGGGAGGTC GCATCCCTGT TTGTGGGGAC 801 TGGGAGAGGT TTGGGGCTGA TGTCAATGGC AGAGCGGAGG GAAACACTTG 851 CGCCTCTCCC CCGTGAGCTG CAGCTGACCC CTCACCGTGT TTTCCCCCCC 901 CTTCCCCATC CTCCTCAGGC TGCTGAATGA GAGCGAGAAG CGTCCCTTCG 951 TGGAGGAGGC CGAGCGGCTG CGGGTGCAGC ACAAGAAGGA CCACCCCGAC1001 TACAA
Fig. 4.
Sequence
ofgenomic cSox9 clone, pBS 71101.Splice
donor and acceptor sequences are underlined(PCR-primer
sequences arenotshown).this
study
werecompared
with nucleotide databases andassigned
ashomologues
of the mostclosely matching
mam¬malian sequences. None of the
amplified
sequences corre¬sponded
to a chickhomologue
ofSry,
but all sequencesrepresented
members of theSox genefamily (Fig.
3).The
predicted
amino acid sequences of the six groups of clones werecompared
with the amino acid sequences of mammalian Sox genes. This enabled identification of theprobable
mammalianhomologues: Group
1 sequencesdifferby
oneaminoacid frommouseSox 9;
Group
2 sequencesdifferby
oneaminoacid from human
SOXll; Group
3 sequences differby
oneaminoacidfrommouseSoxl4;Group
4sequencesdifferby
two amino acids from human SOX3;Group
5 sequencesshow four amino acid
differences
from mouse Soxl2; andGroup
6 sequences are identical tohuman SOX4.Toavoid
confusion,
the nomenclature ofWright
etal. (1995)was
adopted
and these clones weredesignated
cSox9, cSoxll,c5oxl4,
cSox3, cSoxl2 and cSox4. Asummary ofcomparisons
of chick sequences with mammalianhomologues
is shown(Table
2).One of these sequences
(Group
1)represents
the chickhomologue
ofSox-9,a generecently implicated
in sexreversalin mammals. This clone was used to screen a chick genomic
library.
Positive clones were used as atemplate
in PCRreactions with the
primers
R5 and R3. Theresulting
PCRproduct, designated pBS
71101, contained 1066bp
ratherthanthe
expected
233bp.
The 1066bp fragment
wassubcloned andsequenced. Analysis
of this sequence was found tocomprise
theHMG box ofcSox9 withS33 ofintronic sequenceflankedby
consensussplice
sites. The nucleotide sequence of thisgenomic
clone isshown(Fig.
4).Discussion
Reverse
transcription-PCR
wasused to examinetheSry-related transcripts present
in thegenital ridge/mesonephros
of chickembryos
betweenday
5 andday
7ofdevelopment.
Intermsofgonadal development, days
5—7 ofembryogenesis
in chickscorrespond
todays
10—12 in mice, andrepresent
theperiod during
whichSry
isexpressed.
Itcouldreasonably
be assumedthat should a
Sry homologue
function in the same manner in the chick, the gene would beexpressed
at this time in thedeveloping gonad.
The failure to detectexpression
of anSry homologue
in thedifferentiating genital ridge coupled
withprevious
unsuccessfulattempts
toidentify
chickSry suggest
that the mechanism of sex determination in chicks does not
depend
on thisdevelopmental
switch.Expression
of a number ofSry-related
Sox genes was detected,although practical
difficultiesinisolating genital ridge
tissues free from
contaminating mesonephric
tissue made itimpossible
to be certain that thisexpression
occurred in thegenital ridge.
A mutation in one of these Sox genes has beenimplicated
in sex-reversal in mammals (Foster et al, 1994;Wagner
et al, 1994). A chickgenomic library
was screenedusing
the PCR clone cSox9 as aprobe
tostudy
this gene in chickens. DNA extracted frompositive
clones was used as atemplate
in PCR reactionscontaining
the HMG boxprimers.
The PCR
product
waslarger
thanpredicted, suggesting
thepresence of intronic sequences, which was
subsequently
con¬firmed
by
DNA sequenceanalysis.
Theposition
of the intronwithin theDNA
binding
motif ofcSox9corresponds exactly
tothat
recently published
formouse Sox9(Wright
etal,
1995).In conclusion, these results
suggest
that the sex- determination mechanism in chicks is notdependent
on ahomologue
of the mammalian testisdetermining
gene. How¬ever,
expression
of a Sn/-related gene alsothought
to beinvolved in mammalian
gonadal development
was demon¬strated in the
genital ridge/mesonephros
at a time co-incident with chickgonadal
differentiation.The authors thankP.Koopmanforassistance inassigningclonesas
homologues
tomammaliansequences.This workwassupported by
acommission from theMinistryof
Agriculture,
Fisheries and Foods.References
Altschul SF,GishW,Miller W,MeyersEW andLipmanD] (1990) Basiclocal alignment searchtoolJournal ofMolecularBiology215 403—410
Coriat -M, Müller U, Harry JL, Uwanogho D and Sharpe PT (1993) PCR
amplificationof SRY-relatedgene sequencesrevealsevolutionaryconserva¬
tionof the SRY-box motifPCRMethods andApplications2 218-222
FosterJW,Dominguez-SteglichMA,GuioliS,KwokC,WeilerPA,StevanovicM,
WeissenbachJ,MansourS,YoungID,GoodfellowPN,BrookJDandSchaferAJ (1994) Campomelic dysplasia and autosomal sex reversal caused by
mutations inanSRY-relatedgene Nature372 525-530
GriffithsR (1991) The isolation of conserved DNA sequencesrelated tothe human sex-determining region Y gene from the lesser black-backed gull {Larusfuscus) ProceedingsoftheRoyalSocietyofLondon224 123—128 GubbayJ,CollignonJ,KoopmanP,Capel ,EconomouA,MunsterbergA,Vivian
N, Goodfellow and Lovell-Badge R (1990) Agene mapping to the sex determining region ofthemouseY chromosomeis amember ofa novel familyofembryonicallyexpressedgenesNature346 245—250
HarleyVR,JacksonDI, HextallPJ,Hawkins JR, BerkovitzGD, Sockanathan S,
Lovell-BadgeRandGoodfellowPN (1992)DNAbindingactivityofrecom¬
binantSRYfromnormalmales andXYfemalesScience255 453—456
Koopman P, Munsterberg A, Capel , Vivian and Lovell-Badge R (1990) Expression of a candidate sex-determining gene during mouse testis
differentiationNature348 450-452
KoopmanP,GubbayJ,VivianN,Goodfellow PN andLovell-BadgeR (1991)Male
developmentofchromosomallyfemalemicetransgenicforSry.Nature351 117-121
LaudetV,StehelinDand Clevers (1993)Ancestryanddiversityof theHMG
boxsuperfamilyNucleic Acids Research21 2493-2501
Maniatis T, Fritsch EF and Sambrook J (eds) (1982) Molecular Cloning: a LaboratoryManual ColdSpringHarbourLaboratory, NewYork
Nasrin N, Buggs C, Kong XF, CarnazzaJ, GoeblM andAlexander-Bridges M
(1991) DNA-binding properties of the product of the testis-determining
geneand arelatedproteinNature354 317-320
Payen EJandCotinot CY (1993)ComparativeHMG-boxsequencesof theSry
genebetweensheep,cattleandgoatsNucleic Acids Research21 2772 RiminiR,PontiggiaA,SpadaF,FerrariS,HarleyVR,Goodfellow PN and Bianchi
ME (1995) Interaction of normal and mutant SRY proteins with DNA Philosophical TransactionsoftheRoyalSociety ofLondon 350 215—220 SinclairAH,Berta ,PalmerMS,HawkinsJR,Griffiths BL,SmithMJ,FosterJW,
FrischaufAM, Lovell-BadgeRand Goodfellow PN (1990) A genefrom the human sex-determining region encodes a protein with homology to a
conservedDNA-bindingmotifNature346 240-244
Tucker PKandLundriganBL (1993) Rapid evolution of thesex determining
locusinOld World miceandratsNature364 715-717
Tucker PKand Lundrigan BL (1995) The nature of gene evolution on the mammalianYchromosome: lessons fromSry.PhilosophicalTransactionsofthe
RoyalSociety ofLondon350 221—227
WagnerT,WirthJ,MeyerJ,Zabel , Held M,ZimmerJ,PasantesJ,BricarelliFD, KeutelJ,HustertE,WolfU,TommerupM,Scempp Wand Scherer G (1994) Autosomalsex reversal andcampomelic dysplasiaarecausedbymutations
inand around theSRY-relatedgene SOX9Cell79 1111-1120
WhitfieldLS,Lovell-BadgeRand GoodfellowPN (1993)Rapidsequenceevolu¬
tionof the mammaliansex-determininggeneSRY Nature364 713—715
WrightE,HargraveMR,ChristiansenJ,CooperL,KunJ,EvansT,GangadharanU, GreenfieldAandKoopman (1995) TheSry-relatedgene5ox9isexpressed during chondrogenesisinmouseembryosNature Genetics9 15—20