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UZH@CRAFT ST: a Sequence labeling Approach to Concept Recognition

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Figure

Figure 1: Example of discontinuous and overlappingannotations in an elliptical coordination construction.
Figure 2: Occurrences of all concepts in the CRAFTontologies, as annotated by OGER in a large subset ofMedline+PMC, sorted by rank.
Figure 4: Example of labeling with IOBES tags (NER)and concept IDs (NEN).
Figure 5: A symbolic illustration of the BioBERT model as a result of a BERT model pretrained on the PubMedcorpus and fine-tuned for NEN on the CRAFT corpus.
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