T cell receptor alpha-chain gene
rearrangements in B-precursor leukemia are in
contrast to the findings in T cell acute
lymphoblastic leukemia. Comparative study of
T cell receptor gene rearrangement in
childhood leukemia.
J Hara, … , T W Mak, E W Gelfand
J Clin Invest.
1987;
80(6)
:1770-1777.
https://doi.org/10.1172/JCI113270
.
We have analyzed T cell receptor alpha-chain gene configuration using three genomic
joining (J) region probes in 64 children with acute lymphoblastic leukemia (ALL). 11 out of
18 T-ALLs were T3 positive; alpha-chain gene rearrangements were demonstrated in only
two of 18, indicating that the majority of T-ALLs would have rearrangements involving J
alpha segments located upstream of these probes. In contrast, 15 out of 46 B-precursor
ALLs showed rearrangements of the alpha-chain gene and J alpha segments located
approximately 20-30 kb upstream of the constant region were involved in 13 of these
patients. Nine of 15 B-precursor ALLs with rearranged alpha-chain genes had
rearrangements of both gamma- and beta-chain genes, whereas the remaining six had no
rearrangements of gamma- and beta-chain genes. These findings indicated that
alpha-chain gene rearrangement is not specific for T lineage cells and gamma- and/or beta-alpha-chain
gene rearrangement does not appear essential for alpha-chain gene rearrangement, at least
in B-precursor leukemic cells.
Research Article
Find the latest version:
T
Cell
Receptor a-Chain Gene Rearrangements
in
B-Precursor
Leukemia
Are in Contrast
to
The
Findings
in T
Cell Acute Lymphoblastic Leukemia
Comparative
Study
of TCellReceptor
GeneRearrangement
inChildhood
Leukemia
Junichi Hara,StephenH. Benedict,TakW.Mak,*and ErwinW.Gelfand
DivisionofImmunologyandRheumatology, ResearchInstitute, TheHospitalforSickChildren, Toronto, Ontario MSG1X8;and *Department ofMedicalBiophysicsandDepartment ofImmunology, OntarioCancerInstitute, Toronto, OntarioM4XIK9 Canada
Abstract
We have
analyzed T cell
receptora-chain
geneconfiguration
using
three
genomic
joining (J) region probes
in
64 children
with
acutelymphoblastic
leukemia
(ALL).
11 outof
18
T-ALLs
wereT3
positive;
a-chain
gene rearrangements weredemonstrated in
only
twoof
18, indicating
that the
majority
of
T-ALLs would have
rearrangementsinvolving
Ja
segmentslocated
upstreamof these probes. In
contrast,15
outof 46
B-precursor ALLs showed
rearrangementsof the a-chain
geneand Ja
segmentslocated
-20-30 kb
upstreamof
theconstantregion
wereinvolved in
13 of these
patients.
Nine of 15
B-pre-cursor
ALLs with
rearranged
a-chain
geneshad
rearrange-mentsof both y- and
t8chain
genes,whereas the
remaining
six
had
norearrangementsof
Sy-and
,8-chain
genes.These
findings
indicated that a-chain
gene rearrangementis
notspecific
for
Tlineage cells and
y-and/or ,8-chain
gene rearrangementdoes
notappear
essential
for a-chain
generearrangement,
atleast in
B-precursor leukemic cells.
Introduction
On
the basis of
immunologic
and
enzymatic analyses,
acuteleukemias
arepresumed
toresult from clonal
expansion
of
cells that
arearrested
at aspecific
stageof differentiation
(1,
2).
This hypothesis
has been
supported
by
studies of
rearrange-mentsof
Ig and
Tcell
receptor(TCR)' ,3-
and
y-chain
genesin
leukemic
cells
(3-10).
The
characterization
of
Ig
and
TCR
gene
configuration
is therefore useful
notonly
for the
detec-tion
of
clonality
but
also
for
the
investigation
of
lymphoid
cell
differentiation (1
1).
Three
Tcell-specific
genefamilies,
a-,13-,
and
y-chain
genes,
that
rearrangeduring
somatic
development
have
been
characterized (12-16). Rearranging
a-and
,8-chain
genesen-code the
a-and
fl-polypeptides,
respectively,
which comprise
the
antigen-specific
TCR
together
with the T3
polypeptide
Address correspondence to Dr. Erwin W. Gelfand, Department of
Pediatrics,
National Jewish Centerfor Immunology and RespiratoryMedicine, 1400 Jackson St., Denver, CO 80206.
Receivedfor publication6March 1987 and in revisedform 15 June 1987.
1.Abbreviations usedinthis paper:ALL,acute
lymphoblastic
leuke-mia; C, constant; D,diversity;H,heavy;J,joining, L,light;
TCR,T cell receptor;V,variable.chains (17,
18).
The
protein
product of the
y-chain
gene mayalso be
associated
with the T3 complex, but in conjunction
with
aputative
TCR 6 proteininstead of the a- orf3-polypep-tides. However, the
function
of TCR
yremains
uncertain(19, 20).
Recent
studies have
suggesteda developmental hierarchyof
Ig
geneactivation.
InB
precursorcells, Ig heavy (H)-chain
gene rearrangements
precede Ig
light (L)-chain
genes. Theprotein products of
rearrangedIgH-chain
genes may inhibitfurther
rearrangementsof the H-chain
gene and activatek-chain
gene rearrangements(21). These
areconsidered
to bespecific
markers
identifying
cells
of
Blineage (22).
Itis
possiblethat
ananalogous series of
eventsmaycharacterize
TCR geneactivation. n-Chain
generearrangementand expression
are thefirst
eventsin
Tcell
ontogeny,followed
by
3-chain
gene rear-rangementand
expression. a-Chain
geneexpression
isob-served
only in
maturethymocytes and
peripheral
Tcells which
have
T3
antigen
onthe cell
surface (19, 23-28).
Inview ofthis,
it has been proposed that a-chain
gene rearrangements may beregulated by
aproduct
of
the rearranged
,8-chain
gene, andthis
specific
eventwould be
restricted
tocells
of
Tlineage. The
number
of
joining
(J)
gene segmentsof
the
a-chain has
beenestimated
at >55,
and
these
segments arespread
overaregion
of> 50 kb
(29).
Becauseofthis
unique
structure, ananalysis of
a-chain
gene rearrangementshas
been
difficult
using
constant(C)
region probes,
and there
have been
noreportsabout the
detailed
analysis
of a-chain
geneconfiguration
in
alarge
num-ber
of leukemic
samples. Recently,
genomic probes
for Ja
seg-mentshave been isolated and
this
has made it
possible in
part toanalyze TCR
a-chain
geneconfiguration
(30). To
delineate
the
hierarchy
of TCR
gene rearrangementand
todetermine
the
lineage
specificity
of TCR a-chain
gene rearrangement, wehave
examined
a-chain
geneconfiguration
using Ja genomic
probes in
addition
toTCR
y,13,
and Ig
genesin 64
children
with
acutelymphoblastic
leukemia (ALL).
Methods
Analysisofleukemic cellsurface markers. Mononuclear cells were obtained from bone marrowbyFicoll-Hypaque gradient
centrifuga-tionatthetime ofdiagnosis,beforeinitiation oftreatment.The sam-ples evaluated contained >85% malignant cells. Reactivity with a
panelof monoclonal antibodieswasassessedby indirect immunofluo-rescenceusingfluorescentmicroscopy(5). Thediagnosis ofT-ALLwas made basedontheexpressionofTcell-associatedantigenssuch asT3
(CD3),T4(CD4),T6(CD1),T8(CD8),T1 (CD2),Leu I(CD5),and WTI (CD7). Ifleukemiccellslacked bothTcell-associated antigens and surface immunoglobulin, but expressed the B cell-associated
antigen B4(CD19) and/orBI (CD20), theywereclassifiedas
B-pre-cursor ALL.
DNApreparation. High-molecular weightDNA was extractedby routine methods fromthemononuclear cells. TheDNAsampleswere
1770 J. Hara, S.H.Benedict, T. W.Mak, andE. W.Gelfand J.Clin. Invest.
© The American Society for Clinical Investigation, Inc.
0021-9738/87/12/1770/08 $2.00
digestedwith restriction endonucleases. The digested DNA was sub-jected toelectrophoresisin - 0.6-0.9% agarose gels andtransferredto
nylon filters by the Southern blotting technique. Filters bonded with DNA were thenhybridized to probes labeled with32Pby the random primer method (31) and visualized by autoradiography.
Geneprobes. The human Ig gene probes were the Ig M-chain con-stant region probe (1.3-kb Eco RI fragment, provided by Drs. T. H. Rabbitts and G. Matthyssens) (32) and the Ig k-chain constant region probe (2.5-kb Eco RI fragment provided by Dr. P. Leder) (33). The TCR /3-chain gene probe was a 0.8-kb BglII-Eco RV cDNA fragment containing constant regionsubcloned from the cDNA clone YT-35 (12) and hybridized to both constant regions C:Iand C132. Using this probe, rearrangements of either theCB1 or
C#2
locus were detected after Bam HI digestion. Eco RI and Hind III digests demonstrated rearrangements of C/31 and C/32 loci, respectively (34). The TCRy-chain gene probe was thejoining region probe (0.7-kb Hind III-Eco RI fragment provided by Dr. T. H. Rabbitts) (35) and hybridized to
Jy
1.3 andJy
2.3. After Bam HI digestion, rearrangements ofJy
1.1,Jy 1.2,JPy
1.3,Jy
2.1, andJy
2.3 loci were detected with theJy
probe. After Eco RI digestion, rearrangements of only J-y 1.3 and J'y 2.3 loci were detected because Eco RI separatedJy 1.3 andJ7
2.3 from the otherJy
segments (36). The TCR a-chain gene joining region probesused in this study were the JaB,JaC, andJaD probes (2.3-, 4.7-, and 2.0-kb Eco RI fragments, respectively) (30). Of these, the JaD probe is the furthest upstream, about 30 kb from the constant region.
Results
Immunological analysis. A summary of reactivity with
mono-clonalantibodies for the 18 patients with T-ALL is shown in Table I.11 of 18 patients were positive for CD3, which appears
at a late stage of T cell development. However, the remaining
seven
patients did
notexpressCD3 and
wereconceivably
de-rived
from
anearlier
stageof
differentiation
(37).
One
patient
(Pt.
1) showed
only
reactivity
with
CD7;
which
recognizes
the
earliest
Tcell-associated
antigen
(38).
The
B-precursor
ALLsweredivided into three
subgroups
according
tothe
phenotypic
classification
proposed
by
Nadler
et
al.
(39) (Table
II):
Iaand CD
19
(Stage II,
4%);
Ia, CD
19,
and
common
ALL
antigen
(CALLA,
CDIO) (Stage
III,
76%);
and
Ia,
CD19,
CD10,
andCD20
(Stage IV, 20%).
In 12patients,
BA-2
(CD9)
wasused insteadof CD 19. Leukemiasbelonging
toStageI(solely
Ia')
wereexcluded from thisstudy,
as wehavelabeled such leukemias
asunclassified. In 41
patients,
cyto-plasmic Ig (cIg)
wasexamined,
and
10
patients (24%)
werepositive.
Ig
generearrangement.
IgH
gene wasanalyzed by
the C,
probe after
Bam HIdigestion. Among
the 18
patients
with
T-ALL,
twopatients (Pts.
2
and
8)
showed
asingle
rearranged
band whose
size
wasclose
tothat of the
germline
band
(Table
I).
Aspreviously
reported,
this
unique
pattern
waspreviously
observed in HSB2 cells
(T
cell
line),
T
cell,
myeloid,
and
un-classified
leukemia
(40).
39 of 46
patients
with
B-precursor
ALL showed
rearrange-mentsof
IgH-chain
genewithout
agermline allele,
and five of
them
had
threerearranged
bands
indicating
biclonality
orchromosomal
abnormality
(Table
II).
The
remaining
sevenpatients
had
single
allelic rearrangements with
agermline
con-figuration
onthe
other allele.
Inaddition,
rearrangements
of
the
k-chain
genewereexamined
using
the Ck
probe
after Bam
HI
digestion
in
39
patients
with
B-precursor
ALL.21
patients
(54%)
demonstrated
rearranged
bands
ordeletion.
Table
I.Surface
AntigenExpressionand Rearrangements
ofImmunoglobulin
and
TCell Receptor
Genesin18 Patientswith
TCell
ALLT cell receptorgenest
Surfacemarkers* Immunoglobulingenet 0
Pt. No. CD7 CD3 CDI CD2 CD4 CD8 A
IO
Barn HI EcoRI"1 aI + - - - _ - G R/R R/R D G
2 ND - - 20 + 30
R/G
R/R R/R D G3 + - - + - - G R/R R/D R/D G
4 ND - - + + + G R/R R/D
R/D
G5 ND - + + + 42 G R/R R/D D G
6 ND - + + + + G
R/R
R/D
D G7 ND - 30 + - + G R/R R/D
R/D
G8 + + 20 - + - R/G R/R R/R R/D R/G
9 ND 18 18 + - 20 G R/R R/R R/R G
10 ND + + + 40 40 G R R/D R/D G
11 ND + 44 + 19 - G R/R R/R R/D G
12 ND 15 + + 10 + G R/R R/D R/D G
13 ND + 30 + 29 + G R/R R/R D G
14 ND 30 + + + + G R/R R/R R/D G
15 + + - + - _ G R/R R/R R/R R/G
16 ND + - - 27 - G R/R R/R D G
17 ND 33 - + 42 45 G R/R R/R R/R G
18 ND + - + - - G R/R R/R R/D G
*(-)<100 positive cells;
(+)>
50%positive cells. Numbersarespecific percentages of positivecells. t(R)rearranged;(G)germline;(D) de-leted. § PatternsafterBam HIdigestionareshown. In allpatientsexceptforPt.6, there was no retainedgermlineband. Pt. 6 retained one
TableII.Rearrangement ofImmunoglobulinand T Cell Receptor Genes in 46 Patients withB-PrecursorALL
Immunoglobulin genes* T cell receptor genes*
Group Pt. No. Phenotypet A K Bam HI Eco RI"
A 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 B C 49 50 51 52 D 53 54 55 56 57 E 58 59 60 61 62 63 64 II II III III III III III III
III,
III IIIIV,
IV III III III III III IV IV IIIIII,
III III III III IV IV IV IIIIII,
IIIIII7
III III IIlf III III IIIIII,
IIIf III III IIIf IV R/R/R R/G R/D R/D R/R/R R/D R/R R/G R/R/R R/D R/R R/R R/R/R R/R R/R R/R R/R R/D R/G R/R R/D R/D R/D R/R/R R/D R/R R/R R/R R/R R/G D/D R/G R/R R/D R/D R/R R/R R/D R/G R/R R/D R/R R/R R/D R/G R/R D G D D R/D G G ND R/G G ND G R/D R/D D R/R G ND ND G ND R/D ND D G ND D G D R/G D G G G D R/D G D G G G G D G D R/D G G G G G G G G G G G G G RD**/G~tt
R D/GB R G/G R D/G R G/G R G/G R G/G R G/G R G/G R D/G R D/G R G/G R D/G R G/G R G/G R D/G R D/D R D/G R/R D/G RG/G
R G/G R/R D/G R/R D/GB R/R D/GB R/R D/G R/RD/G
R/R D/D R G/G R G/G R/R D/G G G G G G G G G G G G G G G G G G G G G G G G G R/G R/D R/D R/G R/R R/G R/D R/R R/G R/D R/G R/R R/G R/D R/R R/D R/D R/R G G G G G R/D R/G G G G G G G G G G G G G G G G G G G G G G G D D G D G D D G D G D G D R/D D R/D D G G G G G D G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G R/G R/G R/G R/R R/R R/R R/G R/R R/G R/G R/G R/G R/R R/R R/R G*(R)rearranged; (G)germline;(D) deleted. tII,
Ia
andCDl9
werepositive;
III,
Ia,
CD19,
andCD10
werepositive;
IV,
Ia,
CD19,
CD10,
andCD20werepositive. 1Patternsafter Bam HIdigestionareshown. "lPatternsof bands
corresponding
toC,
1 locus.'Cytoplasmic
M-chain wasdetected inthesepatients. **Configurationofgermlinebandcorresponding
to 1locus. *Configuration
ofgermline
bandcorrespond-ingto-y2 locus. 0Additionalrearrangedbands thatwere notdetectedafterEco RI
digestion
weredemonstratedafterBamHIdigestion
inTCR
y-
and ,8-chain gene rearrangement.
We
previously
reported the
analysis
of TCR y- and (3-chain
gene rearrange-mentsin
T-ALLand B-precursor
ALL(7, 9). These and
addi-tional results
aresummarized in Table I and
II.All T-ALLs
and
30
outof 46 B-precursor
ALLs(65%) showed
rearrange-mentsof the TCR
y-chain
gene. MostT-ALLs
(17 of 18)
possessed
rearranged fragments
onboth chromosomes and
re-tained
nogermline configuration. In
contrast,only eight
B-precursor ALLs
showed biallelic
rearrangementsand
germline
configuration
wasretained in the
majority
of
patients (28
of 30).
All T-ALLs
and 20
outof 46 B-precursor ALLs (43%)
also had rearrangementsof the TCR-( chain
gene.The
differences
in
the rearrangement patternsbetween
T-ALLand
B-precur-sor ALL were
observed after Eco
RIdigestion.
In germline
DNA, Eco RI
digests
yielded
11-and 4-kb
fragments
contain-ing
Cfl
and
C(32, respectively.
The
4-kb
fragment
does notchange in size
evenwhen the (32
locus
rearranges,because
Eco RI separatesC(2
from
diversity
(D)
gene segmentsand
Jo3.
With the
11-kb
fragment,
12 outof 18
patients
with
T-ALLshowed
rearranged bands without
germline configuration.
In contrast toT-ALL,
only
twooutof the 20
patients
with
B-pre-cursor ALL
which had TCR
(3-chain
gene rearrangementsdemonstrated
rearranged bands after
Eco RIdigestion.
The
remaining
18patients
showed
germline bands
orbiallelic
de-letions of
C(3
1fragments
in the absence
of
arearranged band.
TCR a-chain rearrangement.
A
restriction enzyme map of
TCR
a-chain and the
genomic
Ja
probes used in this study
areshown in
Fig.
1.If
aJa
segmentin
arestriction
fragment
recognized by
oneof
these
probes recombines with
avariable
(V) or a
putative
D segment, Ja sequences located upstreamof
the
recombination site
aredeleted, the size
of
the
resulting
fragment becomes different from
germline, and
arearranged
band
is observed.
DNA
samples
digested with
Eco RI,Hind
III,and
Bgl
II wereexamined.
As shownin
Figs.
2and 3, ingermline DNA, Eco RIdigests yielded 2.3-,
4.7-, and8.3-kb
fragments
corre-sponding
tothe JaB, JaC, and
JaDprobes,
respectively. After
Hind
IIIdigestion,
a4.8-kb
fragment
wasrecognized
by the JaD probe,and
threefragments
(0.7,
1.7, and 5.3 kb) wererecognized
by the JaC probe.
In an attempt todetect allelic
deletion clearly, Eco
RIdigests
werehybridized with
thesethree
probes at the sametime
and theintensity
ratio of eachband
wasassessed by
densitometry
in
comparison with
agermline
control. Furthermore, in blots digested with Hind
III,
the
DNAhybridization ratio between
the 4.8-kb (JaD probe)and 5.3-kb
(JaC
probe) bands wasassessed
in the same man-ner. Incases where rearranged bands were demonstrated, the rearranged band was screened by hybridization with singleprobes. The
enzymeBgl
II produced 9.3- and 5.7-kb fragmentsidentified by the JaC
probein
germline DNA (Fig. 4). The5.7-kb
fragment
was not rearranged without a deletion of the 9.3-kbfragment.
We concluded, therefore, that the 9.3-kbfragment lies
upstream of the 5.7-kb fragment and contains aEHH H E H HE H HE HH E EHH EH E H
III lI11I1
J a D
H --I I JaC JaB
H
1kb
large
partof the
regions
upstreamof the JaC
sequences.This
digestion
wasuseful
toidentify
rearrangementsinvolving
Ja
segments located between the JaC
and the
JaDprobes.
The patterns
of
a-chain
gene rearrangement aresumma-rized in Tables 1-111. Southern blots of
DNAsdigested
with
Eco
RIfrom
T-ALLpatients
areshown in
Fig. 2 A. No
rear-rangedbands
wereobserved. However, in
twopatients (Pts.
8
and
15),
single
allelic
deletions of the
JaD sequences weredetected based
ondecreased
intensity
of the 8.3-kb bands and
were
confirmed
after Hind
IIIdigestion
(Fig.
2B).
Inaddition,
Pt. 15 showed
arearranged Bgl II band hybridizing
tothe
JaC
probe
(Fig. 4).
15 out
of 46
DNAsamples
digested
with Eco
RIfrom
B-precursor ALL
patients (33%) demonstrated
rearranged
bands
and/or
deletions
(Tables
IIand
III).
Fig. 3,
Aand
C
shows
the
patternof
rearrangementsin
these 15
patients.
In 7of
15, there
weredeletions
of the JaD
sequencesonboth alleles
(Pts.
52, 53, 54, 56,
61, 62, and
63);
another
sevenshowed
single allelic deletions of these
regions
without
anyrearranged
band
(Pts. 49, 50, 55, 57,
58, 59,
and
60),
and the
remaining
patient (Pt. 51) had
asingle
allelic
rearranged
band
corre-sponding
tothe JaD
sequenceswhile
retaining germline
con-figuration
on theother allele. One
(Pt.
63)
of the first
grouphad
asingle
rearranged band
containing
the JaC
sequencesand
deleted the
germline
bands
corresponding
tothe JaC and
JaD
probes.
Single
allelic deletion
corresponding
tothe
JaB probe wassuggested in
this
patient
by the
DNAhybridization
ratio. This suggested that
aJa
segmentin the JaC
sequences wasinvolved in the
rearrangement,and
Jaregions
located
upstream
of
atleast the
3'terminus
of
the
JaB sequencesweredeleted
onthe other allele. Also in the first
group,Pt.
53
showed
deletions of Ja
segmentscorresponding
tothe
JaD sequences on oneallele and
tothe JaB, JaC,
and JaDse-quences on
the other allele. These
findings
after Eco
RIdiges-tion
wereconfirmed by Hind
IIIdigestion (Fig. 3,
Band
D).
In 12of
15patients,
DNAsamples
digested with
Bgl
II werehybridized with the JaC
probe(Fig.
4). Rearranged bands were demonstratedin five patients (Pts. 54, 55, 56, 61, and 63). Exceptfor
Pt.63,
thesepatients retained
germlineconfigura-tion. The
twoapparently rearranged bands in
Pt. 54 could represent onesomatic
rearrangement plus a chromosomalab-normality.
Overall, in 13
of
15
patients with
B-precursor ALLhaving
rearrangements
of a-chain
gene, Ja segments located betweenthe JaC and the
JaD sequences were involved in these rear-rangements. Moreover, based on the experiments using Bgl IIdigestion,
in the majority of these patients,
the rearrangements occurredbetween
the 3'
site of
JaD sequences and theBgl
IIrestriction site
located upstream of the JaC sequences(Ta-ble III).
Patients
with unusual combinations of TCR gene
rear-rangements. After analysis of the findings of TCR gene
config-uration,
the 46patients with
B-precursor ALL were tentativelydivided into five
subgroups as shown in Table II. Most patientsH H H H Figure 1. A restriction map of TCR a-chaingeneandthegenomicJaprobes -4-* used inthisstudy. (E)EcoRI;(H)Hind Ca III restriction sites. Bgl II restriction sites
(a)
G
8
15
1 25
10 18
D(843
kb) --
4-
X-
-u-rn
C
(4.7
kb)
--*mo*B(2.3 kb)
-(b)
G
815
C(5.3kb)--
-.m
D(4.8kb)
-Figure 2. The rearrangement patterns of TCR a-chain gene in pa-tients with T cellacutelymphoblasticleukemia. Patient numbersare notedabove each lane. Lane G shows thegermlinecontrol. Dotted linesB, C, and Doneitherside of each gel indicate thegermline po-sitionscorrespondingtotheJaB,JaC and JaDprobes,respectively. (a)DNAsweredigestedwith Eco RI andwerehybridizedwith the JaB, JaC, and JaDprobesatthesametime. TheJaB,JaC,and JaD probes demonstrated2.3-,
4.7-,
and 8.3-kbbands,respectively,ingermlineDNA.Afaint bandjustbelowthe JaC band inPt. 15was
duetocross-hybridization. Similar bandswereobserved in the other lanesontheoriginalfilm.
(b)
DNAsweredigested
withHind III and werehybridizedwith the JaC and the JaDprobesatthesametime. The JaC and the JaDprobesdemonstrated three bands(0.7-, 1.7-,and5.3-kb)and 4.8-kbband,
respectively,
ingermline
DNA. 0.7-and 1.7-kb bandscorresponding
tothe JaCprobe
are notshown in thisfigure.with
B-precursor
ALLshowed
acombination
of TCR
gene rearrangementsconsistent with the
proposed
hierarchy
that
-y-chain
gene rearrangementis the
first event followedby
f-chain
rearrangementand
subsequently
a-chain
generear-rangement
(19,
23-28). However,
sevenpatients
(Group E)
demonstrated
unusual
combinations
of TCR
generearrange-ments.
Patients
58
through
61 had rearrangements of the
a-chain
genedespite
retention of
germline configuration
of
thef-chain
gene; threepatients (Pts. 62-64)
had
rearrangementsof the
fi-and/or
a-chain
genewhile
retaining germline
configu-ration of
y-chain
gene.Discussion
Lymphoid leukemias
arepresumed
toresult from
the clonalexpansion
of cells arrested
atdifferent
stagesof
lymphoid
on-togeny
(1,
2).
Theseleukemias
offer theopportunity
toanalyze
clonal
cells,
and molecularanalysis
of
thesecellsis
apowerful
tool
for
investigation
of
thedifferentiation of
lymphoid
pre-cursor
cells.
Analyses of Ig,
TCRfi-,
andy-chain
generear-rangements have been
reported
for leukemic
patients,
andthese
data have
provided insights into
thedifferentiation
pro-cessof
hematopoietic cells (3-11,
40-42).In
the
presentstudy,
we have analyzed a-chain geneconfig-uration in addition
tothe TCR y,
fi,
and
Ig genesin 64chil-dren
with
ALLusing
three genomic
Ja
probes. Rearrange-mentsof the a-chain
gene were observed not only in T-ALLbut also B-precursor ALL.
Inthis
way, wehave demonstratedfurther
heterogeneity
of B-precursor
ALL at the gene level.These data
also
indicated that similar
toy-
and13-chain
genes, rearrangementof the a-chain
geneis
notspecific for T-lineagecells
and cannottherefore
be
used
as aspecific
markerindicat-ing
Tcell
lineage.
All
18
T-ALLpatients had
rearrangementsof
both -y- andA-chain
genes,but
rearrangementsof a-chain
genes wereob-served in only 2 of 18
patients
with
T-ALL(Table
I).Leuke-mic cells
from
these
twopatients
expressed T3 antigen on thecell
surface. Although
it has been reported that
apopulation
of Tcells
expressesT3
antigen
in the absence of
thea/f
hetero-dimer,
such
apopulation
wasinfrequent
(19,
20, 43). Furley
etal. reported that all
T-ALLpatients
whose
leukemic cells
hadT3
antigen
onthe cell
surface
expressed 1.6
kb messenger RNAof
the
a-chain
genewhich is
conceivably functional,
and
suggested
rearrangementof the
a-chain
genein these
patients
(28).
Inthe
presentstudy,
11 outof
18 T-ALLs expressed T3
antigen.
If
one assumesthat
these
11patients
have
rearrange-mentsof
the a-chain
gene,Ja
segmentslocated in the region
recognized by
the JaB,
JaC,
and JaD probes
wereinvolved in
only
twoof the
11patients,
and
leukemic cells
from
the
re-maining
nine
patients
should
therefore have
rearrangementsinvolving
Ja
segmentslocated
upstreamof the
JaD sequences.Although
we cannotcompletely rule
outthe
possibility of
sin-gle allelic
deletion
of
the whole JaB
sequencesand
Jaregions
located
upstreamof them,
considering
the
amountof
DNA,it
seemed
unlikely.
On the
contrary,a-chain
gene rearrange-mentswereobserved in
75%of cloned
functional
Tcell
lines
with the probes used in this study and similar
digestions
(30).
Rearrangements of Ja
regions
located
upstreamof the
JaD sequences maybe favored in
T-ALL.Rearrangements of the a-chain
gene were alsodemon-strated in 15
of
46
(33%) B-precursor
ALLpatients (Table II).
Surprisingly,
in
contrasttothe
findings
in
T-ALL,
rearrange-mentsin 13
of these
15patients
involved
Jasegments located
between
the
3' site of the
JaDprobe
and the 5'
site
of the
JaC
probe
(Table
III).
Itis
notclear
why
a-chain
generearrange-ment
in
B-precursor
leukemic cells should favor
arecombina-tion site that
wasrarely
observed in
Tleukemic cells.
Patients
(Pts.
58-64)
with unusual
combinations
ofTCR
gene
rearrangements
werealso
observed. Four
patients
(Pts.
58-61)
hadrearrangements of both
y-anda-chain
genesde-spite
germline
configuration
of the fl-chain
gene; Pts. 62 and64
had
a-orf-chain
generearrangements
alone,
respectively.
Pt.
63 had rearrangements of both
fi-
and a-chain
geneswith-out
ay-chain
generearrangement.
Thesefindings
suggest
that the orderof
TCR generearrangement
maynotalways
be strictand that
products
of
rearranged
ay-
orfl-chain genesmaynotbeessential
for
the nextstep of
generearrangement, i.e.,
fi-
ora-chain
generearrangement,
atleast inB-precursor
cells. The TCR gene systemtherefore
seems to bedifferent
from theIgH-chain
andL-chain
genes whereIgL-chain
gene rearrange-mentshaveneverbeenobserved without
IgH-chain
generear-rangements
and theprotein
products
of
rearranged IgH-chain
genesmaybenecessary
for
IgL-chain
generearrangement (21).
...-G 49 50 51
G
52 58 59 60 53D(83kb)
-C(4.7kb)-- -
_
_
C-- _---B-- _-B(2.3kb)
--(b)
G 49 50 51 G G 52 58 59 60 53 G
C(5.3kb) -- - -
_
D(4.8kb) -- -
-4-d C-- _ .... - _
D D--_ m_
_ _-F-_
_W I E
-(C)
63 54 61 G 55 62 56
D(8.3kb)
--C(4.7kb)-- sac
4
-\C
B(2.3kb)-- - -
-
- - _ mO_
(d)
C(5.3kb) D(4.8kb)
--63 54 61 G 55 62 56
mm
\C
ItisnecessarytoanalyzeT lineagecellsusing ml toconfirm thesepotential differences.
Recentstudiesinfetalmouserevealed thatp
G 63 54 6", 55 62 56 G 53
9.3kb
Figure 4. Therearrangement patternsofTCR a-chain
IIdigestion.Patient numbersarenoted aboveeach lan
showsthegermlinecontrol.DNAsweredigestedwith]
werehybridized withthe JaC probe.Bgl II cleavedthe quencesand yieldedtwogermline bands(9.3 and 5.7k indicated by dotted linesoneither side ofeachgel.Rea
areindicatedbyarrowsonthe gels. Faintbands inthe
thegelswerecaused by cross-hybridization.
D --_m
C
--_=00
Figures 3. RearrangementpatternsofTCRa-chaingeneinpatients withB-precursoracutelymphoblasticleukemia.Patientnumbersare
B-- _ _ noted above eachlane. Lane G shows thegermlinecontrol. Dotted
linesB,C,and Doneitherside ofeachgelindicatethegermline posi-tionscorrespondingtotheJaB, JaC,andJaDprobes, respectively. Rearrangedbandsareindicatedbyarrows(c)and(d) correspondingto the JaC and the JaDprobes, respectively,onthegels.(a) and (c) DNAsweredigestedwith Eco RI andwerehybridizedwiththeJaB, JaC, andJaDprobesatthesametime.(b) and(d) DNAswere di-gestedwithHind IIIandwerehybridizedwith theJaCand the JaD probesatthesametime. Faint JaDbands in Pts.52,53(a),and 61(c)
representDNAfromcontaminating nonleukemic cells. Weak hybrid-izations causedby cross-hybridizationwereobservedjustaboveJaBor
belowJaCbands inc.
oreJaprobes in liver and a population of early thymocytes had no
rear-rangement ofthe f-chaingene, and suggested that
fl-
anda-irethymocytes chaingene rearrangements occurin the thymus (27). More-over, leukemiccells having no CD3 or CDl, but expressing
8 1I5 antigen,frequently
hadnorearrangementof thefl-chaingene(10, 44). Therefore,
fl-
anda-chaingenerearrangementsmaybeeventsoccurring after the commitment to T cell lineage,andsuch phenomena _ 9.3kb may not be observed in uncommitted cells. Accordingly, ifaam 5.7kb leukemiccellsfrom B-precursorALLarepresumedtobe the
_~Now counterparts ofnormally developing cells, then it ispossible
that
#-
ora-chaingenerearrangementsinsuch cellsmayalsooccurafterthecommitment to Bcell lineage concomitantly withrearrangementsof IgH- and L-chaingenesbyanactivated
commonrecombinational system(45). Rearrangements of
fl-and a-chaingenesinthesecellsmay then be independent of
geneafter Bgl the thymus. Such extrathymic ofTCR
Bge II and hasbeen observed innude mice(46). Subsequentlyand
irre-BJgCse- spectiveoftheconfigurationofTCRgenes, only precursorB
cb) whichare cells that accomplished productive rearrangements of both
arranged bands IgH- and L-chain genes would differentiate to functional B
lowerhalfof cells.Othercellswouldbeeliminated.
In this study, a significant proportion of patients with
B-(a)
Table III.PatternsofTCell Receptor a-Chain
GeneRearrangements
JaC JaD
JaB
Eco RI, Eco RI, Pt. No. Eco RI HindIII BglII Hind III
T-ALL 8 G G G D/G
15 G G R/G
D/G
B-precursor ALL 49 G G ND D/G
50 G G G D/G
51 G G ND
R/G
52 G G G D
53
D/G
D/G D/G D54 G G R/R/G D
55 G G R/G D/G
56 G G R/G D
57* G G ND D/G
58 G G G D/G
59 G G G D/G
60 G G G D/G
61 G G R/G D
62 G G G D
63 D/G R/D R/D D
(R)rearranged; (G) germline; (D) deleted.
*Hind III digestion was not done in this patient.
precursor ALL
showed
rearrangementsof TCR
genes (TableII).
However, the
patternof
rearrangements wasreadily
distin-guished from those observed in T-ALL. The
majority
of
pa-tients withB-precursor
ALL(93%) retained
germline
frag-ments
of
the
y-chain
gene,but
nopatients with
T-ALLother
than
the
exceptional
patient
had
anygermline configuration
of
the
y-chain
gene. In mostB-precursor ALL, Cf
1fragments
were
completely
deleted
orretained
without
any rearrangedbands,
andonly
10%showed
rearrangementstoC3 1.
In con-trast, 67% of T-ALLshowed
rearrangementtoC#3I.
Further-more,
B-precursor
ALL, which did
rearrangethe a-chain
gene,exhibited
apreferred
site of recombination that
wasseenrarely
in T-ALL.
Conversely, single
allelic
IgH-chain
gene rearrange-ments wereobserved
in
twopatients
with T-ALL. However,
rearrangements in these
twopatients
showed the
unique
pat-ternof
aclose doublet
which
wehave
previously reported (40)
and
which
was neverobserved in
B-precursor
ALL.
Most
B-precursor ALL(85%)
retained
nogermline
of the
IgH-chain
gene.
In
summary,the
findings
inthe
presentstudy
indicate that
TCR
a-chain
gene rearrangementsfrequently
occurin
B-pre-cursor
leukemic cells and
are notspecific
for Tlineage
cells. Inaddition,
inB-precursor
leukemiccells, products
ofrearranged
'y-
or,B-chain
genesare notalways
required
for a-chain
gene rearrangement.Rearrangements of the
a-,fl-,
andy-chain
genes are
prevalent
in
B-precursor
ALL.Nonetheless,
thepat-terns
of TCR
gene rearrangementsarein
general
distinguish-able in
B-precursor
ALLfrom
T-ALL.Coupled
with
Ig
genestudies,
it is
possible
toassign
celllineage
to themajority
of
childhood
ALL.Acknowledgments
We areindebted to the members of the Division of
Hematology/On-cology forprovidingpatient
specimens,
to A. Goldstein for surfacemarkerstudies, and Dr. P. Doherty and Dr. G. Mills for helpful dis-cussions. Drs. T. H. Rabbitts, G. Matthyssens, and P. Leder kindly provided theTyand Igprobes.
Supported by the National CancerInstitute ofCanada, the Medical ResearchCouncil of Canada and the Muscular Dystrophy Founda-tion. Dr. Hara and Dr. Benedictarerecipientsof Terry Fox Fellowship awards.
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