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CellFishing jl: an ultrafast and scalable cell search method for single cell RNA sequencing

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Figure

Fig. 1 Schematic workflow of CellFishing.jl. CellFishing.jl first builds a database (DB) object that stores data preprocessors, indexed bit vectors, andgenes, number of reduced dimensions, and length of the bit vectors, respectively.cell metadata, if provi
Fig. 21, where || · || bluestandard deviation of ten trials. The approximation error for a real matrixfollowing formula: minrank(X)≤j ||A − X|| = σj+��� A with a low-rank matrix is bounded by a singular value as illustrated in the���trials
Fig. 3 Locality-sensitive hashing of expression profiles (Shekhar2016).cosine distances following dimensionality reduction
Fig. 4n-centroids-factor=1n-features=500refers to the number of reference cells) parameter and the number of features parameter, respectively ( b√n-centroids-factorand the number of independent locality-sensitive hashes, respectively (times
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