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Programming dynamic nonlinear biomolecular devices using DNA strand displacement reactions

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Figure

Figure 2.5: Catalysis reaction Xhold domain reaction rate is tuned toreleasesysis reaction (strands such asXgle stranded DNAs,±1 → X±2 +X±3
Figure 2.6: Catalysis reaction XY(± → X± +Y ±. The unimolecular catalysis reaction(2.18) is approximated from the DNA implementation with reaction index i
Figure 2.7: Bimolecular reaction Xproducing the intermediate complexproducingadapted from [molecular reaction (species,±1 + X±2 → X±3 : DNA implementation of a bi-2.22) with reaction index i and black boxes highlighting the X±1 , X±2 , X±3 .In (2.19) X±1di
Figure 2.9: Annihilation reaction Xthe fast dynamics; as adapted from [hence,dation of auxiliary speciesreaction dynamics are separated into fast and slow time scales such that,+ + X− → φ: The DSD diagram shows degra- X+ and X− by means of molecules Li and
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