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A Method to Predict Amino Acids at Proximity of Beta Sheet Axes from Protein Sequences

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Figure 1. Set of sequences with optimal folding properties. SOFs (red) were calculated as in [28] for the central pro- absence of SOF is found between amino acids 114 and 115 and is characterized by the integer part of the gap’s middle tein domain of Clost
Figure 2. Representation of a gap position and of a gap region in a protein sequence. For the protein domain of PDB position is applied to proteins of lengths 101 and 150 for the prediction of topologically interesting positions (TIPs)
Table 1. Distribution of distances between gaps and TIPs within seven amino acids long beta-strands
Table A1. List of protein domains and of the probabilities q calculated according to Equation (2)

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