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A hybrid reference-guided de novo assembly approach for generating Cyclospora mitochondrion genomes

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Figure

Fig. 1 Workflow chart for recovering mitochondrial genomes from metagenomic sequence datasets
Table 1 Results of mapping, trimming and assembly of sequencing reads from three C. cayetanensis strains
Fig. 3 Identification of four repeats in the mitochondrion genome potentially affecting de novo assembly quality
Fig. 4 Comparison of the new mitochondrial assemblies and the public sequences with the reference genome

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