From observations to ecosystem analysis. The data flow generating FAIR data Lennert Schepers

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From observations to

ecosystem analysis

The data flow generating FAIR data

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1. Data collection 5. Data integration 4. Data Archiving and Publication 3. Dataset Description Scientific question 2. Data analysis 6. Data dissemination /reuse

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OPEN

DATA

CYCLE

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1. Data collection 5. Data integration 4. Data Archiving and Publication 3. Dataset Description

Scientific

question

2. Data analysis 6. Data dissemination /reuse

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1. Data collection

1. Data collection 5. Data integration 4. Data Archiving and Publication 3. Dataset Description Scientific question 2. Data analysis 6. Data dissemination /reuse

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Long term sampling stations

Monthly sampling campaigns

Nieuwpoort: 120 – 215 – ZG02

Oostende: 130 – 230 – 330

Zeebrugge: 700 – 710 - 780

Seasonal sampling campaigns

Additional stations: 421 W08

LW01 W10 LW02 W09 – 435

-W07bis

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1. Data collection - result

Result:

● sample taken according to

well-defined protocol

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2. Data analysis

1. Data collection 5. Data integration 4. Data Archiving and Publication 3. Dataset Description Scientific question 2. Data analysis 6. Data dissemination /reuse

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2. Data analysis

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1. Data collection 5. Data integration 4. Data Archiving and Publication 3. Dataset Description sample analysis database internal data storage Scientific question 2. Data analysis 6. Data dissemination /reuse

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2. Data analysis

From sample to image to observation

sample analysis database internal data storage

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3. Dataset description

1. Data collection 5. Data integration 4. Data Archiving and Publication 3. Dataset Description Scientific question 2. Data analysis 6. Data dissemination /reuse

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3. Data set description

http://www.vliz.be/imis?module=dataset&dasid=4687

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4. Data Archiving and Publication

1. Data collection 5. Data integration 4. Data Archiving and Publication 3. Dataset Description Scientific question 2. Data analysis 6. Data dissemination /reuse

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4. Archiving: Marine Data Archive

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Data publication

http://www.vliz.be/imis?module=

dataset&dasid=4687

https://doi.org/10.14284/394

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5. Data Integration

1. Data collection 5. Data integration 4. Data Archiving and Publication 3. Dataset Description Scientific question 2. Data analysis 6. Data dissemination /reuse

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5. Data Integration

1. Data collection 5. Data integration 4. Data Archiving and Publication 3. Dataset Description Scientific question 2. Data analysis 6. Data dissemination /reuse

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QC Standardization Integration Integrated database

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Integrated marine biological database:

● EurOBIS

LifeWatch Species Information Backbone:

● EurOBIS

● World Register of Marine Species

● Marine Regions

5. Data Integration

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Taxonomic quality control

Dataset Scientific names After tax. check 1 Calanus fimarchicus

2 Calanus finmarchicus Calanus finmarchicus

3 Calanus elegans

4 Cetochilus finmarchicus

Data standardisation

urn:lsid:marinespecies.org:taxname:104466

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Controlled vocabularies

Data standardisation

Biomass?

_●

_{Dry weight?}

● Ash-free?

● Wet weight?

● Units?

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5. Data Integration

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6. Data dissemination

1. Data collection 5. Data integration 4. Data Archiving and Publication 3. Dataset Description 2. Data analysis 6. Data dissemination

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6. Data dissemination

1. Data collection 5. Data integration 4. Data Archiving and Publication 3. Dataset Description 2. Data analysis 6. Data dissemination

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dissemination reuse products

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6. Data dissemination

● LifeWatch Data Explorers

● Kustportaal

● Data paper

● EMODnet Biology

FAIR - Findable - Accessible - Interoperable - Reusable

dissemination reuse

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6. Data dissemination: data explorer

Interactive viewer to

visualize the data

http://rshiny.lifewatch.be/

zooscan-data/

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6. Data dissemination: data explorer

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6. Data dissemination: data portals

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6. Data dissemination: data papers

Data paper: much more than data!

● Detailed description of whole workflow, from sample to data integration

● How to access the data

● ...

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6. Data dissemination: EMODnet Biology

www.emodnet-biology.eu

Portal on EurOBIS database

● Download toolbox

● Viewer

● Webservices

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8. Data reuse: from data to data products

dissemination reuse

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8. Data reuse: from data to data products

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8. Data reuse: from data to data products

ICES' Operational Oceanographic Products and Services (OOPS)

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