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Prediction of Phenotypic Antimicrobial Resistance Profiles From Whole Genome Sequences of Non-typhoidal Salmonella enterica

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TABLE 1 | Comparison of phenotypic antimicrobial susceptibility testing and genome-derived resistance prediction for non-typhoidal Salmonella enterica (n = 3491).
TABLE 2 | Relationship between decreased ciprofloxacin susceptibility (<CIP, MIC 0.06–0.25 mg/L), full ciprofloxacin resistance (>CIP, MIC > 0.5 mg/L) and the mostcommon genotypic quinolone resistance determinants in non-typhoidal Salmonella enterica.
TABLE 3 | Most common combinations of antimicrobial resistance phenotypes and genotypes in non-typhoidalS
FIGURE 1 | Association of resistance determinants and travel history. Red cells indicate a significant association (p-value < 0.05) between patient travel and theoccurrence of phenotypic resistance to at least one antimicrobial, multidrug resistance (MDR) o

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