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ABSTRACT

Cells must maintain genomic integrity despite constant exposure to sources of DNA

damage. The most genotoxic form of damage is the double-strand break and its improper

repair causes genomic instability and cancer predisposition. An undamaged homologous

sequence can serve as the template for repair of a double-strand break, and increased

mobility may be required to facilitate an efficient homology search. Chromatin exhibits

increased mobility upon DNA damage, but the physical mechanism remains unknown.

To explore this mechanism, we employ in vivo single-particle tracking of tagged loci in

haploid yeast. We find that cytoskeletal actin contributes to increased chromatin and

nuclear dynamics upon damage, reflecting its role in meiosis to promote homolog pairing

by nuclear mixing. This presents a new model for increasing chromatin mobility to

facilitate homology search in the DNA damage response.

INTRODUCTION

DNA is continually exposed to sources of damage including radiation,

carcinogens and replication errors. The double-strand break (DSB) is the most genotoxic

form of DNA damage (Agarwal, Tafel, & Kanaar, 2006; Wyman & Kanaar, 2006), and

its improper repair could lead to genomic instability, cancer predisposition or cell death

(Rassool, 2003; Thorslund & West, 2007). Therefore, the cell must have efficient and

accurate mechanisms for resolving DSBs.

Two mechanisms have been identified for repair of DSBs: nonhomologous end

joining (NHEJ) and homologous recombination (HR). Mammals rely largely on NHEJ,

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key role in HR. When DNA becomes damaged, an undamaged homologous sequence can

serve as the template for repair, and, through the process of HR, the genetic information

lost by a DSB is restored. The undamaged sister chromatid is the preferred template for

repair of a DSB, but is not always readily available, and increased DSB mobility may be

required to facilitate an efficient homology search (Gehlen, Gasser, & Dion, 2011;

Savage, 1996). Recent studies have shown that chromatin exhibits such an increase in

mobility upon DNA damage (Dion, Kalck, Horigome, Towbin, & Gasser, 2012;

Miné-Hattab & Rothstein, 2012), but the mechanism remains unclear.

Homolog pairing also plays a key role in meiosis to ensure high fidelity of

chromosome segregation that haploidizes the genome prior to gametogenesis (Lee,

Conrad, & Dresser, 2012). How chromosomes become paired during meiosis is largely

unknown, but active nuclear stirring by the cytoskeleton has been suggested to play a role

in bringing homologous regions into proximity (Maguire, 1974). In S. pombe, telomeres

move along microtubules via dynein motors and become clustered at the spindle pole

body (SPB), forming the bouquet arrangement in preparation for meiosis (Chikashige et

al., 1994). Similar rapid movements of chromosomes have been identified in the budding

yeast S. cerevisiae, but appear to be promoted by actin rather than by microtubules

(Koszul, Kim, Prentiss, Kleckner, & Kameoka, 2008; Scherthan et al., 2007;

Trelles-Sticken, Adelfalk, Loidl, & Scherthan, 2005).

We investigated whether the actin-driven nuclear stirring mechanism implicated

in S. cerevisiae during meiosis to pair homologs is used in the DNA damage response (DDR) to facilitate homology search. We find nuclear dynamics depend on actin but not

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suggest a role for actin in maintaining dynamics of the nucleus. It remains to be seen if

actin drives the increased nuclear motion observed upon DSB.

RESULTS

Chromatin’s response to DNA damage is global

We investigated how chromatin dynamics are altered during interphase in

response to two different DNA damage conditions: (1) multiple DSBs induced randomly

across entire chromosomes and (2) a single I-SceI-induced DSB at a known locus. To

measure, we use in vivo single-particle tracking of a GFP-labeled chromatin array

(lacO/lacI-GFP) at RAD16 relative to the unduplicated SPB (Spc29-RFP) over 10 min at

30 s intervals and measure subpixel localization by Gaussian fitting. RAD16 is located

240kb from CENII, approximately midway between the centromere and telomere (Figure

1A). To quantify subnuclear confinement, we calculate the radius of confinement (Rc) of

the array from the standard deviation of spot positions, σ, and the average squared

deviation from the mean position, ⟨r2

0⟩, as previously described (Verdaasdonk et al.,

2013).

A wild-type (WT) undamaged RAD16 locus explores an area with Rc = 705 nm

(Figure 1C; Table 1). To investigate the effect of DNA damage, cells were treated with

phleomycin, a DNA intercalating agent that induces DSBs randomly throughout the

genome (Chen, Ghorai, Kenney, & Stubbe, 2008). After treatment with low

concentration of phleomycin, RAD16 mobility significantly increased to Rc = 854nm

(Figure 1C; Table 1), occupying a 78% greater nuclear volume than undamaged cells. To

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strain engineered with an I-SceI cleavage site at LYS2, 4.7kb away from RAD16 (Figure

1A). I-SceI induction increased RAD16 mobility to Rc = 1103nm (Figure 1C; Table 1),

exploring a 282% greater nuclear volume than uninduced cells. These data show that a

lacO array on the arm on chromosome 2 increases mobility significantly in response to

many random DSBs as well as a single DSB proximal to the lacO array.

To investigate the global nature of the DDR, we use cohesin distribution during

mitosis as readout of chromatin behavior. In mitosis, cohesin is enriched at the

pericentromere and becomes cylindrically arrayed around the mitotic spindle (Ambrosio

et al., 2008; Eckert, Gravdahl, & Megee, 2007; Li et al., 2011; Ng, Waples, Lavoie, &

Biggins, 2009; Stephens, Haase, Vicci, Taylor, & Bloom, 2011). We measure sagittal

width of GFP-labeled cohesin (Smc3-GFP) to quantitate the physical state of chromatin

(Figure 1D). WT cohesin has a diameter (d) of 408nm (Figure 1E; Table 2). Treatment

with phleomycin significantly expanded the cohesin cylinder to d = 455nm (Figure 1E;

Table 2), increasing its volume by 24%. Induction of a single DSB at the MAT locus via

an HO endonuclease expanded cohesin to d = 505nm (Figure 1E; Table 2), a 53% greater

volume than WT. Thus, induction of either many random DSBs or a single DSB on the

arm of chromosome 3 causes significant expansion of pericentromeric cohesin, providing

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*   *   *  

*  

A D

B

C  

E

Figure 1.

(A) Map of S. cerevisiae strain KS406. lacI-GFP binds to lacO at RAD16, 240kb from the centromere on chromosome 2. I-SceI cut site is at LYS2, 4.7kb away from RAD16.

(B) Example of a cell (KS406) in G1 with lacO/lacI-GFP and Spc29-RFP foci. Scale bar, 1µm. (C) Rc values calculated for lacO/lacI-GFP at RAD16 under DNA damage. Phleomycin treatment and induction of a single DSB significantly increased RAD16 mobility (p < 0.05). Scatter plots are included illustrating variance in lacO/lacI-GFP spot position relative to SPB. Scale bar, 500nm.

(D) Example of a cell (WLY8912/KBY6050) in mitosis with Smc3-GFP and Spc29-RFP in WT and under DNA damage. Scale bar, 1µm.

(E) Cohesin sagittal width under DNA damage. Phleomycin treatment and induction of a single DSB caused significant expansion of cohesin (p < 0.05).

Global response to DNA damage is dependent on DNA checkpoint

Increased mobility of a DSB has been shown to depend on RAD51, RAD54,

MEC1 and RAD9 (Dion et al., 2012, Figure 2A; Table 1). We find, in rad9Δ mutants, the

cohesin cylinder does not significantly expand upon treatment with phleomycin or

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both chromatin spot expansion and expansion of the cohesin cylinder upon DNA damage

depends on RAD9.

Microtubule poison has also been shown to increase cohesin cylinder width

(Haase, Stephens, Verdaasdonk, Yeh, & Bloom, 2012). If the mechanisms for cohesin

and chromatin expansion are conserved between the spindle assembly checkpoint and the

DDR, we would predict chromatin mobility to increase upon microtubule poison. To test

this, we used nocodazole to reduce microtubule dynamics (Samson, Donoso,

Heller-Bettinger, Watson, & Himes, 1979) and found RAD16 mobility increased to Rc = 791nm,

similar to the effect upon phleomycin treatment (Figure 2C; Table 1). Thus, the cell

increases chromatin mobility as a response to a variety of perturbations, including both

DNA and spindle damage.

What is the mechanism for increased chromatin mobility?

There are at least 3 possible mechanisms for increased chromatin motion: (1) physical

changes in chromatin, (2) nuclear rocking by the cytoskeleton and (3) changes in the

nuclear environment (i.e. nuclear proteins). If chromatin is physically altered upon

damage, simple polymer theories might account for the increased mobility observed. For

example, elements of the DDR may modify the chromatin polymer, modulating its

persistence length (Lp). Lp is defined as the length over which two spots on a chain lose

directional correlation with each other, and increased Lp causes increased radius of

gyration, a measure of the volume a polymer can occupy (Bloom, 2008). Thus, increased

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*  

A B

C D

Figure 2.

(A) Rc values calculated for lacO/lacI-GFP at RAD16 in a rad9Δ strain (KBY8819). Phleomycin treatment did not significantly increase mobility (p > 0.05). Scale bar, 500nm.

(B) Cohesin sagittal width in a rad9Δ strain (KBY6054). Neither phleomycin treatment nor induction of a single DSB caused significant expansion of cohesin (p > 0.05).

(C) Rc values calculated for lacO/lacI-GFP at RAD16 under microtubule damage. Nocodazole treatment caused a significant increase in mobility (p < 0.05). Scale bar, 500nm

(D) Cohesin sagittal width in two histone mutants, S129A (KBY6062) and S121A (KBY8785). Phleomycin treatment did not cause significant expansion of cohesin in either mutant (p > 0.05).

We hypothesize chromatin Lp is modulated due to histone phosphorylation by

effector kinases in the DDR. One possible histone candidate is H2A, for expansion of

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2012). To test if cohesin expansion upon DNA damage is also dependent on the

phosphorylation of H2A, we measure cohesin sagittal width in two unphosphorylatable

histone mutants, H2A-S121A and H2A-S129A. Upon treatment with phleomycin, the

cohesin barrel did not significantly expand in either mutant (Figure 2D; Table 2). Thus,

expansion of cohesin upon either DNA or spindle damage is dependent on H2A

phosphorylation, evidence for conservation between the spindle and DNA damage

responses.

Nuclear dynamics depend on actin

To investigate whether components of the cytoskeleton modify nuclear motion

upon DNA damage, we quantify SPB (Spc29-RFP) dynamics in addition to RAD16. The

SPB is embedded in the nuclear membrane, and we use the same analysis for Rc as

described earlier. A WT SPB explores an area with Rc = 698nm (Figure 3; Table 1).

Treatment with phleomycin increased SPB mobility to Rc = 782nm, and induction of a

single DSB increased SPB mobility to Rc = 1219nm (Figure 3; Table 1). Thus, SPB

dynamics increase in response to DNA damage, suggesting nuclear dynamics are

enhanced upon DNA damage in addition to chromatin dynamics.

To investigate whether the cytoskeleton drives this response, we used nocodazole

to reduce microtubule dynamics and found no change in SPB mobility (Table 1). Thus,

WT SPB dynamics are independent of microtubules. Next,to test the role of actin in

modulating SPB dynamics, we used latrunculin A to inhibit actin polymerization

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Figure 3.

Rc values calculated for lacO/lacI-GFP at RAD16 and SPB under states of actin and/or DNA damage. Single DSB induction significantly increases lacO and SPB mobility. Latrunculin A does not affect lacO but decreases SPB mobility. Bars with different numbers of asterisks are significantly different (p < 0.05). Scale bar, 500nm.

significantly decreased SPB mobility to Rc = 483nm (Figure 3; Table 1) but did not affect

RAD16 mobility, showing nuclear but not chromatin dynamics depend on actin. To investigate whether actin contributes to increased chromatin and/or nuclear

motion upon DNA damage, we induced a single DSB followed by treatment with

latrunculin A and found RAD16 moved with Rc = 763nm and the SPB with Rc = 645,

both intermediate relative to DSB induction or latrunculin A treatment alone (Figure 3

Table 1). Since RAD16 mobility under this condition was greater than latruncuilin A

treatment alone, an actin-independent mechanism for increasing chromatin mobility

exists. However, RAD16 mobility was also less than single DSB alone, indicating an

actin-dependent mechanism for increasing chromatin mobility as well. Fluctuations in

nuclear dynamics directly correlate with lacO mobility, evidence that nuclear dynamics

affect the motion of its contents. Thus, chromatin dynamics can be modulated by altering

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to maintain normal nuclear dynamics and achieve increased chromatin mobility upon

DNA damage. Further investigation is needed to determine if actin is activated upon

DNA damage to increase nuclear dynamics.

Table 1. Summary of movement parameters Spot  tracked   Relevant  

genotype  

Treatment  or  damage   Rc                                                                             (nm)  

Carbon   source  

Cell   cycle  

No.  of   cells   RAD16  (lacI-­‐GFP)   WT   None   705   Glucose   G1   43     WT   3µg/mL  phleomycin   854   Glucose   G1   68     WT   single  DSB  (I-­‐SceI)   1103   Galactose   G1   14     WT   50µM  latrunculin  A   703   Glucose   G1   15     WT   single  DSB  (I-­‐SceI)/                                      

50µM  latrunculin  A  

770   Galactose   G1   23  

  WT   20µg/mL  nocodazole   791   Glucose   G1   61     rad9   None   1041   Glucose   G1   25     rad9   3µg/mL  phleomycin   1000   Glucose   G1   22   SPB  (Spc29-­‐RFP)   WT   None   698   Glucose   G1   49     WT   3µg/mL  phleomycin   782   Glucose   G1   71     WT   single  DSB  (I-­‐SceI)   1219   Galactose   G1   16     WT   50µM  latrunculin  A   483   Glucose   G1   16     WT   single  DSB  (I-­‐SceI)/                                                      

50µM  latrunculin  A  

645   Galactose   G1   23  

  WT   20µg/mL  nocodazole   698   Glucose   G1   65   Nucleus  (Nup49-­‐GFP)   WT   None   485   Glucose   G1   14     WT   50µM  latrunculin  A     Glucose   G1   11    

Table 2. Summary of cohesin parameters Fluorescent  protein   Relevant  

genotype  

Treatment  or  damage   Diameter   (nm)  

Carbon   source  

Cell   cycle  

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DISCUSSION

How do you increase chromatin motion?

Chromatin exhibits increased mobility upon DSB induction, but the mechanism

remains unknown. It might be that the loose ends roam freely; however, it has been

shown that broken ends of a DSB remain in close proximity (Kaye et al., 2004;

Lobachev, Vitriol, Stemple, Resnick, & Bloom, 2004). Also, the response is global, for it

has been shown that an uncut chromosome increases exploration upon induction of a

DSB on its homolog (Miné-Hattab & Rothstein, 2012). Our work further characterizes

this global response. We now consider three possible mechanisms for the global increase

in chromatin mobility upon DNA damage: (1) altered enzyme activity, (2) change in Lp

and (3) the cytoskeleton.

Chromatin mobility is sensitive to ATP levels (Weber, Spakowitz, & Theriot,

2012), but it is not completely clear why. Most likely, this sensitivity results from the

ATP-dependent activity of chromatin remodelers. For example, removal of nucleosomes

at the PHO5 promoter region by the two remodeling complexes Swi2/Snf2 and INO80

increases PHO5 mobility (Barbaric et al., 2007; Neumann et al., 2012; Steger, Haswell,

Miller, Wente, & O’Shea, 2003). Interestingly, targeting an undamaged locus with

INO80 has also been shown to increase mobility at that locus (Neumann et al., 2012).

With this evidence, others have proposed chromatin-remodeling activities can be used to

promote recombination and are regulated by the DNA repair machinery and the DDR

(Dion & Gasser, 2013).This is plausible, but not likely, as it is difficult to imagine the

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Chromatin can be modeled as a bead-spring chain doubly tethered at both ends

with the parameters temperature (T), contour length (Lc), compaction ratio (Cr) and Lp

(Verdaasdonk et al., 2013). Altering these parameters can change how dynamic the

polymer is and can help explain why chromatin mobility is increased upon DNA damage.

It is unlikely that T or Lc change in response to DNA damage, but alterations in Cr or Lp

are possible. As stated earlier, increasing Lp causes an increase in radius of gyration, a

measure of the volume a polymer can explore (Bloom, 2008). This effect results from

increased stiffness of the chain, as the distance over which the polymer can bend

increases with Lp. Thus, less “wiggle room” is available to the polymer when Lp

increases, and it occupies a greater volume. Therefore, an increase in Lp of chromatin

could be responsible for increased chromatin mobility observed upon induction of DSBs.

We predict the cell modulates Lp in response to DNA damage via checkpoint

proteins, as we have shown cohesin expansion upon DSB induction is dependent on

phosphorylation of histone by checkpoint kinases (Figure 2B and 2D; Table 2). The

phosphorylation sites we tested, S121 and S129, are found at the C-terminal tail of

histone H2A. Bub1 phosphorylates S121 in response to spindle damage (Haase et al.,

2012; Kawashima, Yamagishi, Honda, Ishiguro, & Watanabe, 2010); Mec1 and Tel1

phosphorylate S129 in response to DNA damage (Melo, Cohen, & Toczyski, 2001;

Nakada & Matsumoto, 2003; Zou & Elledge, 2003). Thus, the spindle checkpoint and

DDR both modulate chromatin through phosphorylation at the C-terminus of H2A upon

damage. Interestingly, these residues are found near the site where the DNA enters and

exits the nucleosome (White, Suto, & Luger, 2001). We hypothesize adding a highly

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around the nucleosome, physically altering the chromatin polymer and effectively

increasing Lp. This would explain why cohesin expansion and increased chromatin

mobility are observed upon either spindle or DNA damage.

The cytoskeleton is dynamic and could be utilized to alter the nuclear

environment. For example, upon DNA damage, the cytoskeleton could cause rocking of

the nucleus, mixing its contents and, thus, promoting homology search. In budding yeast,

actin has been implicated to alter nuclear dynamics in meiosis, another instance when

homology search is key (Koszul et al., 2008; Scherthan et al., 2007; Trelles-Sticken et al.,

2005). We have shown that inhibiting microtubule polymerization has no effect on

nuclear motion, but that inhibiting actin reduces nuclear dynamics in WT or after DSB

induction. Thus, nuclear dynamics rely on actin and, theoretically, could be altered in an

actin-dependent manner. Further investigation is needed to determine whether the cell

utilizes this mechanism in response to DNA damage to promote nuclear mixing and

facilitate homology search.

EXPERIMENTAL PROCEDURES

The budding yeast Saccharomyces cerevisiae served as the model organism for

this study. For detailed growth and imaging conditions, see Supplemental Experimental

Procedures. Strain genetic backgrounds can be found in Table S1.

Image Analysis

Images were analyzed using MetaMorph (Molecular Devices, Sunnyvale) and

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GFP or RFP pixel out of each seven plane stack was used to determine the coordinates of

a tagged spot at that time point. To track a lacO or SPB spot, we use a custom MATLAB

program (Speckle Tracker) as previously described (Wan, 2008; Wan et al., 2009; Wan,

Cimini, Cameron, & Salmon, 2012) to perform Gaussian fitting and achieve subpixel

centroid mapping. To track the center of the nucleus, we use Integrated Morphometry

Analysis in MetaMorph to determine the center of the fluorescent Nup49-GFP.

Coordinates were further analyzed using MATLAB and Excel (Microsoft, Redmond).

For chromatin array Rc measurements, Spc29-RFP coordinates were subtracted from

lacO/lacI-GFP coordinates to control for cellular and nuclear motion. To measure cohesin

sagittal width, we use a Linescan in MetaMorph to determine the distance between

brightest pixels on opposite sides of the cylinder.

Calculating Rc from Experimental Data

MATLAB was used to fit the spot positions as µμ!! = normfit(x−x!"#$)

and µμ!,σ! = normfit(y−y!"#$). The variance of the distribution of spot positions is

then calculated as σ2 = mean(σ2x, σ2y). The average squared deviation from the mean

position is ∆r!! = x

!

! + ∆y

!! . Using σ! and ∆r!! , we calculate Rc as

R! =5

4∗ 2σ!+ ∆r!!

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Statistical Analysis

For statistical comparison of reported Rc values, we used Levene’s test to compare

homogeneity of population variances. To compare cohesin sagittal width measurements,

we used a Student’s t-test (p values found in Table S2).

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SUPPLEMENTAL EXPERIMENTAL PROCEDURES

Cell preparations

Genotypes can be found in Table S1. Cells were grown overnight in the proper

media, usually YPD, at 24° C. These overnight cultures were diluted the next morning, a

few hours prior to imaging, to obtain logarithmic phase growth. To induce many DSBs,

cells were treated with 3ug/mL phleomycin for 30 min. To induce a single DSB at a

known locus, cells were grown on YPG for approximately 5 hrs prior to imaging to

induce the I-SceI or HO endonuclease. To inhibit microtubule polymerization, cells were

treated with 20ug/mL nocodazole for 1 hr. To inhibit actin polymerization, cells were

treated with 50µM latrunculin A for 15 min. For imaging, cells were washed and

resuspended in YC complete media with 2% glucose (or 2% galactose for activation of a

Gal-promoter).

  Microscopy:

Images were acquired using a Nikon Eclipse Ti wide-field inverted microscope

with a 100x Apo TIRF 1.49 NA objective (Nikon, Melville, New York, USA) and Andor

Clara CCD camera (Andor, South Windsor, Connecticut, USA). Three-dimensional

stacks, each compiled of seven 200nm z planes, were acquired at room temperature every

30s over a 10 minute period (147 total planes per time-lapse) with Nikon NIS Elements

imaging software (Nikon, Melville, New York, USA). Images were taken in Trans, GFP,

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Table S1. Strain genotypes

Strain Alias

Relevant Genotype

Full Genotype

KS406 WT MAT α, ade5-1, trp1-289, ura3Δ, leu2-3, 112, lys2::insI-Sce1, lacO array next to RAD16 promoter, tetO array next to LYS2 promoter, arg4::hisG Gal1/10 I-Sce1, thr1::HISpLacI-GFP:Nat, ade1::URAptetR-CFP:Hyg, Spc29-RFP:Bsd

KBY9136 WT MAT α, ade5-1, trp1-289, ura3Δ, leu2-3, 112, lys2::insI-Sce1, lacO array next to RAD16 promoter, tetO array next to LYS2 promoter, arg4::hisG Gal1/10 I-Sce1, thr1::HISpLacI-GFP:Nat, ade1::URAptetR-CFP:Hyg, Spc29-RFP:Bsd, NatD::Kan

KBY8819 rad9 MAT α, ade5-1, trp1-289, ura3del, leu2-3, 112, lys2::insI-Sce1 (lacO array next to RAD16 promoter, tetO array next to LYS2 promoter (pRS305tetO), arg4::hisG Gal1/10 I-Sce1, thr1::HISpLacI-GFP:Nat, ade1::URAptetR-CFP:Hyg, Spc29-RFP:Bsd) rad9D::trp

KBY9288 WT trp1Δ63, leu2Δ, ura3-52, his3Δ200, lys2-8Δ1, Spc29-RFP:Kan, Nup49-GFP:Hb

WLY8912 WT MAT α, trp1Δ, 63, ura3-52, his3, lys2, Smc3-GFP:URA3, Spc29-RFP:Hb

KBY6050 WT hoDel, hmlDel::ADE1, MAT α, hmrDel::ADE1, ade1-100, leu2-3, 112, lys5, trp::hisG, ura3-52, ade3::GAL::HO, Spc29-RFP:Hb, Smc3-GFP:URA3

KBY6054 rad9 MAT α, trp1Δ, 63, ura3-52, his3, lys2, Smc3-GFP:URA3, Spc 29-RFP:Hb, rad9DTRP1

KBY6056 rad9 hoΔ, hmlΔ::ADE1, MAT α, hmrΔ::ADE1, ade1-100, leu2-3, 112, lys5, trp::hisG, ura3-52, ade3::GAL::HO, Spc29-RFP:Hb, Smc3-GFP:URA3, rad9DTRP1

KBY6062 S129A MAT α, (hta1-htb1)Δ::LEU2, (hta2-htb2)Δ::TRP1, ura3-52,1, leu2Δ1, lys2Δ1, lys2-128Δ, his3Δ200, trp1Δ63, HTA1-S129A-HTB1, HIS3, Spc29-RFP:Hb, Smc3-GFP:URA3

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Table S2. p values using Levene’s test for Rc and Student’s t-test for cohesin diameter

RAD16  Rc                      

Levene's  Test  (p<0.05)   +phleomycin   +single  DSB   +latrunculin  A   +DSB  +latA   +nocodazole   WT   4.87E-­‐10   6.40E-­‐29   9.17E-­‐01   5.30E-­‐03   5.10E-­‐05  

rad9   3.94E-­‐01                  

           

SPB  Rc                      

Levene's  Test  (p<0.05)   +phleomycin   +single  DSB   +latrunculin  A   +DSB  +latA   +nocodazole   WT   7.91E-­‐04   4.58E-­‐35   4.33E-­‐11   4.82E-­‐02   9.91E-­‐01   rad9   2.70E-­‐03                  

           

Cohesin  Diameter              

    Student's  T  Test  (p<0.05)   +phleomycin   +single  DSB      

    WT   3.29E-­‐04   6.15E-­‐35      

    rad9   1.47E-­‐01          

    S129A   5.22E-­‐01          

    S121A   4.40E-­‐01          

Figure

Table 2. Summary of cohesin parameters
Table S1. Strain genotypes  Strain  Alias  Relevant  Genotype  Full Genotype
Table S2. p values using Levene’s test for R c  and Student’s t-test for cohesin diameter

References

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