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Bioinformatics Summer School 2015

Program

Monday 29

th

June

09:30-10:00am: Participant Arrival & Coffee Break

E0.02 room

10:00-12:00pm: Presentation of the participants and their research interests/experiences

Frédéric Lardeux, Angers University (FR)

Jérémie Bourdon, Nantes University (FR)

E0.02 room

12:30pm: Lunch at cafeteria l’Escale – Belle Beille

5:00-6:00pm: Plenary Conference: 'Polio: nearly extinct but not to be ignored'

Gareth Williams, Bristol University, (UK)

Faculty of Arts - Amphi E (Campus Belle-Beille)

6:00-6:45pm: Opening of the Summer Schools

Isabelle Richard, Dean of the Faculty of Medicine, Angers University (FR)

John Webb, Vice-president for International Relations, Angers University

(FR)

Faculty of Arts - Amphi E (Campus Belle-Beille)

From 6:45pm: Welcome Barbecue

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Tuesday 30

th

June

9:00-12:30pm: Warm up Session

Jérémie Bourdon, Nantes University (FR)

E0.02 room

12:30pm: Lunch at cafeteria l’Escale – Belle Beille

2:15-5:30pm: Warm up Session

Jérémie Bourdon, Nantes University (FR)

E0.02 room

Wednesday 1

st

July

9:00-12:30pm: Session 1: Statistics and classification for genomic studies

Stéphane Robin, INRA, Paris (FR)

Sébastien Loustau et Frédéric Proia, Angers University (FR)

E0.02 room

12:30pm: Lunch at cafeteria l’Escale – Belle Beille

2:15-5:30pm: Session 1: Statistics and classification for genomic studies

Stéphane Robin, INRA, Paris (FR)

Sébastien Loustau, Frédéric Proia, Angers University (FR)

E0.02 room

6:30pm: Visit of Angers by train Car park of the castle

(3)

Thursday 2

nd

July

Session 2: Clinicobiological Databases

9:00-10:00am: Introductory course

Context of clinicobiological data in human genetics; the Human Variome Project; Introduction to Locus-specific Databases; nomenclature for the description of sequence variants

10:00-10:30am: Example of a locus-specific database #1

A locus-specific database for mutations in GDAP1 allows analysis of genotype-phenotype correlations in Charcot-Marie-Tooth

Marc Ferré, Angers University (FR)

E0.02 room

10:30-11:00am: Example of o locus-specific database #2

A locus-specific database for mutations in OPA1 with advanced patient’s ophthalmological data

Dan Milea, Singapore Eye Research Institute (SG)/University Hospital of

Angers (FR)

Salim Khiati, Angers University (FR)

Marc Ferré, Angers University (FR)

11:00-12:00pm: Roundtable

Dan Milea, Singapore Eye Research Institute (SG)/University Hospital of

Angers (FR)

Salim Khiati, Angers University (FR)

Marc Ferré, Angers University (FR)

12:30pm: Lunch at cafeteria l’Escale – Belle Beille

2:00-5:00pm: Session 2 Workshop: Creating a locus specific database

Marc Ferré, Angers University (FR)

Salim Khiati, Angers University (FR)

(4)

Friday 3

rd

July

8:45am: The bus will pick you up at 8:45pm at Couffon Pavot Residence to drive you to Nantes

Session 3 and 4: Next generation sequencing (NGS) in genetics and genomics

10:00-11:00am: Introduction to “Next generation sequencing (NGS)”

Solena Le Scouarnec, Nantes University (FR)

11:00-12:00pm: Session 3: Visit of the Genomic and Bioinformatics core-facility

Richard Redon, Nantes University (FR)

Audrey Bihouée, Nantes University (FR)

12:30pm: Lunch (picnic)

2:00-5:00pm: Interactive session (4): From the raw sequences to the non-synonymous variants : A short exome analysis

Pierre Lindenbaum, Nantes University (FR)

6:00-8:00pm: City tour of Nantes

8:00-11:30pm: Free time in Nantes

(The bus will pick you up at 11:30pm at Baco-Lu parking to drive you back to the student residence)

Saturday 4

th

July or Sunday 5

th

July

Atlantic Coast day(s)

You will get a two-day ticket, meaning you can hop on any regional trains (TER) at given time during the week-end.

You can spend the night there (organized on your own) or travel back and forth on the same day.

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Monday 6

th

July

9:00-12:30pm: Session 5: Bioinformatics and Business companies

Hubert Beaumont, Median Technologies, Valbonne (FR)

Mohammed Bennanni, President Qualees, Paris (FR)

Vincent Procaccio, Angers University (FR)

Sébastien Loustau, Angers University (FR)

E0.02 room

12:30pm: Lunch at cafeteria l’Escale – Belle Beille

2:15-5:30pm: Session 5: Bioinformatics and Business companies

Hubert Beaumont, Median Technologies, Valbonne (FR)

Vincent Procaccio, Angers University (FR)

Sébastien Loustau, Angers University (FR)

E0.02 room

6:30-8:30pm: Kayak session Lac de Maine

Tuesday 7

th

July

9:00-12:30pm: Session 6: Microbial metagenomics

Damien Eveillard, Nantes University (FR)

Lois Maignien, University of Western Brittany (FR)

E0.02 room

12:30pm: Lunch at cafeteria l’Escale – Belle Beille

2:15-5:30pm: Session 9: Introduction to Metabolic Network analysis

Jérémie Bourdon, Nantes University (FR)

Workshop session #1: basics skills on Metabolic Network analysis

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E0.02 room

Wednesday 8

th

July

9:00-12:00pm: Session 7: Association mapping and system genetics - from GWAs to function

Common Variants: the GWAs Rare variants: pooled tests

Christian Dina,Nantes University (FR)

Juliana Ionita Laza, Columbia University (USA)

E0.02 room

12:30pm: Lunch at cafeteria l’Escale – Belle Beille

2:15-5:30pm: Session 7: Association mapping and system genetics - from GWAs to function

Hands on GWAs

Hands on rares variants

Christian Dina,Nantes University (FR)

Juliana Ionita Laza, Columbia University (USA)

E0.02 room

6:30-8:00pm: Meeting industrial firms (optional) Amphi 200 – Faculty of Medicine

Thursday 9

th

July

Session 8: Optimization methods for bioinformatics

9:00-10:30am: Introduction

Laëtitia Jourdan, INRIA Lille (FR)

Béatrice Duval, Frédéric Lardeux, Frédéric Saubion, Angers University

(FR) E0.02 room 11:00-12:30pm: Presentation

Laëtitia Jourdan, INRIA Lille (FR)

Béatrice Duval, Frédéric Lardeux, Frédéric Saubion, Angers University

(FR) E0.02 room

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2:15-4:00pm: Article analysis

Laëtitia Jourdan, INRIA Lille (FR)

Béatrice Duval, Frédéric Lardeux, Frédéric Saubion, Angers University

(FR) E0.02 room

6:00 – 8:30pm: Olympiad

SUAPS, Campus Belle Beille

Friday 10

th

July

9:00-12:30pm: Session 9: Case study and guided exercices on « Computer modeling of living systems »

Constraint-based of metabolic networks

Alexander Bockmayr, Berlin University (DE)

Jérémie Bourdon, Nantes University (FR)

E0.02 room

12:30pm: Lunch at cafeteria l’Escale – Belle Beille

2:00-3:00pm: Session 9: Case study and guided exercices on « Computer modeling of living systems »

Workshop session #3 Metabolic Networks on communities

Alexander Bockmayr, Berlin University (DE)

Jérémie Bourdon, Nantes University (FR)

E0.02 room

3:30-5:30pm: Closing of the Summer Schools 2015 Amphi 200, Faculty of Medicine

From 6:00pm: Visit of Jean Lurçat tapestries and farewell drinks Museum Jean Lurçat

References

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