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Identification of transcription factor binding sites using ATAC seq

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Figure

Fig. 1 Cleavage enzymes of ATAC-seq and DNase-seq. Sequence motif relative to aligned read starts after cleavage with Tn5 and DNase I enzymeson naked DNA ATAC-seq (a) and DNase-seq (b) experiments
Fig. 2 Strategies for cleavage bias correction. Comparison of bias estimation methods in standard ATAC-seq (Additional filea) and DNase-seq (b) on 32 TFChIP-seq data sets from GM12878 cells
Fig. 3 Local nucleosome architecture and footprints. a Cleavage profiles around CTCF ChIP-seq peaks indicate strand-specific cleavage preferenceleft/right of the TF binding site for distinct ATAC-seq protocols in GM12878 cells
Fig. 4 Nucleosome architecture and strand-specific cleavage profiles.linkers.of nucleosomes
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