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Explorations of Site-to-Site Synonymous Substitution Rate Variability.

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Figure 1.3 Unrooted Tree. Unrooted tree with 4 descendant sequences.
Figure 1.6 Comparison of Synonymous and Nonsynonymous Coefficients of Variation (CV). For each ofthe 721 datasets, we plot its estimated synonymous and nonsynonymous CV
Figure 3.2 Estimated Nonsynonymous CV for Varying Rate Categories. For all the mitochondrial data setsthe estimated nonsynonymous coefficient of variation (CV) using 10 rate categories plotted against theestimated nonsynonymous CV using 3 categories (A), 5
Figure 4.4 Power Curves and P-Value Boxplots for Simulation of a Tree with 33 Sequences and with 5000 Codons Faceted by the True ωValue.The blue boxplots are the caluculated p-values according to BUSTEDThe power of each test for each value of synonymous CV
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