Translational profiles of alpha 1-, alpha 2-, and
beta-globin messenger ribonucleic acids in
human reticulocytes.
S H Shakin, S A Liebhaber
J Clin Invest.
1986;78(4):1125-1129. https://doi.org/10.1172/JCI112670.
In human reticulocytes, the critical balancing of alpha- and beta-globin synthesis may be
controlled in part by differential translation of the three major adult globin messenger RNAs
(mRNAs), alpha 1, alpha 2, and beta. In this study, we determined, as a parameter of
translational efficiency, the relative ribosome loading of these three mRNAs. Using
oligonucleotide probes specific for the alpha 1- and alpha 2-globin mRNAs, we find that
these two mRNAs have identical translational profiles. Their distribution contrasts with that
of beta-globin mRNA, which is present on heavier polyribosomes and is less prevalent in
pre-80S messenger ribonucleoprotein fractions. The relative distribution of alpha- vs.
beta-globin mRNA is consistent with more efficient beta-beta-globin translation. In contrast, the
parallel distributions of alpha 1- and alpha 2-globin mRNAs suggests they are translated
with equal efficiencies. Considering the relative concentrations of the two alpha-globin
mRNAs in normal reticulocytes, this result predicts a dominant role for the alpha 2-globin
locus in human alpha-globin expression.
Research Article
Find the latest version:
http://jci.me/112670/pdf
Rapid
Publication
Translational Profiles of Alpha 1-, Alpha 2-,
and
Beta-Globin
Messenger
Ribonucleic
Acids in Human
Reticulocytes
Susan H.ShakinandStephenA.LiebhaberHoward Hughes Medical Institute,andtheDepartments ofHuman Genetics andMedicine, UniversityofPennsylvaniaSchoolofMedicine, Philadelphia, Pennsylvania 19104
Abstract
In human
reticulocytes, the critical balancing
ofa-andfl-globin
synthesis
maybe controlled
in partby
differential translation ofthe three
major adult globin
messenger RNAs(mRNAs), al,
a2, and
ft.
Inthis
study,
wedetermined,
as aparameter oftrans-lational efficiency,
the relative ribosomeloading
of these threemRNAs.Using
oligonucleotide probes specific
for the al- anda2-globin mRNAs,
wefind
that these two mRNAs have identicaltranslational
profiles.
Theirdistribution
contrastswith that ofj3-globin
mRNA, whichis
present onheavier
polyribosomes
andis lessprevalent in
pre-8OS
messengerribonucleoprotein
frac-tions. Therelative distribution of
a-vs.13-globin
mRNA iscon-sistent with
moreefficient
ft-globin
translation. In contrast, theparallel distributions of
al- anda2-globin
mRNAs suggeststhey
aretranslated
with
equal efficiencies.
Considering
the relativeconcentrations of the
twoa-globin
mRNAs innormal
reticulo-cytes,
this result
predicts
adominant role for the
a2-globin
locus in humana-globin expression.
Introduction
Control over eukaryotic gene expression can be exertedinboth
the nucleus
and
cytoplasm. Nuclear
events,including
RNAtranscription, processing, and
transport, determine the patternof
messenger RNAs(mRNAs)'
delivered to thecytoplasm.
Theefficiency
with which these
mRNAs aretranslated
inacellde-termines the final
patternof
proteins
produced.
Inboth human
and
rabbit reticulocytes, the synthesis
of a- andf3-globin
proteins
is balanced
despite
an excessof
a-globin
mRNA(1,
2). Previous
studies,
based onindirect detection
of mRNAby
translationalanalysis and by identification of
nascentpeptides
onactively
translating polysomes,
suggest that the balancedsynthesis
ofglobin proteins
resultsfrom both
selectivesequestration
of aportion
of the
excessa-globin
mRNAinto nontranslated
mes-senger
ribonucleoprotein (mRNP) complexes (3)
andfrom
moreAddress correspondence to Dr. Liebhaber. Receivedfor publication29May 1986.
1.Abbreviations used in this paper: cDNA, complementary DNA; mRNA and rRNA, messenger and ribosomal RNA; mRNP, messenger ribo-nucleoprotein; SSC, standard saline citrate; 15X SSPE, 2.23MNaCl,
150mMNaH2PO4, and 15 mM EDTA, pH 7.0.
efficient ribosome
loading
offl-globin
mRNA(rabbit
[
1, 4-6];
human
[7-9]). Subsequent studies
have shown that human a-globin is itself encoded by two separate mRNAs,aland a2(10-12), which
arepresent inunequal
concentrationsinthereticu-locyte
(13-15).
Astheprevious
comparisons ofa-andfl-globin
mRNA
distributions
werebased onprotein analysis, they
couldnot
detect
these two separate a-globinmRNAs nor be used todetermine their relative contributionstoa-globin synthesis. In thepresent report, we determine thetranslationalprofilesofthe al-, a2-, and
fl-globin
mRNAs by direct detection of each mRNA inpre-80-S
mRNPs and across thepolysome profile
of humanreticulocyte lysate. The results of
thisanalysis
furtherdefine the basis of the balanced expression
ofthe human a- andfl-globin
genes.Methods
Preparation ofhuman reticulocyte lysate. Human reticulocytes were en-richedfromwhole bloodofan individual with sickle cell anemia by Percol-Hypaquegradient centrifugation(16). For this fractionation, 1.5 mlofwashed packed red cells was applied to a 12-ml gradient containing 35% Percol (Sigma ChemicalCo., St.Louis, MO) and 10% Hypaque (WinthropLaboratories, New York, NY) in sterile water and spun at 13,000 rpm in a Sorval SS34 rotor at4VCfor 10 min. The top red band
wasisolated, and then the cells in this fraction were washed three times with 0.15 M NaCl; an aliquot was stained for reticulocytes (Reticulocyte Stain;Becton-Dickinson & Co., Rutherford,NJ), and the remaining cellswerelysed in 2 vol of sterile water and stored in small aliquots at -700C.
Sucrosegradientfractionation ofreticulocyte
lysate.
Sucrose gradient fractionationof reticulocyte lysate was performed essentially as described (17).Briefly,50Al
of reticulocyte lysate was diluted in 100Ml
of sucrose gradientbuffer(17)containing 2 U of heparin, layered directly onto 15-40% 5-mlsucrosegradients,and spun asdescribed(17). After centrifu-gation,the top500 ,l of eachgradientwasremoved manually and the gradients were sacrificed by displacing them upwards through an ultra-violet absorbance monitor.Acontinuous absorbance profile of each gra-dientat260nmODwasobtained, and fractions correspondingtoeach peakin thegradient profilewerecollected.Preparation ofprobes. a- and ,B-globin complementary DNA (cDNA) insertswerereleasedfrom the plasmids pMC18 (18) and pSAR6 (19), respectively, byPstldigestion, resolved on 5% acrylamide gels, isolated by electroelution, and labeled by nick translation. The labeled DNA was purifiedby G50 Sephadex column chromatography and heat-melted at 90°Cfor 2 minbeforeuse. DNAoligomers, prepared by the DNA Syn-thesis Center oftheCancer Centerof the Hospital of the University of Pennsylvania, were end-labeled using
y-[32P]ATP
and polynucleotide kinase(20) and purified by G25 Sephadex column chromatography.Dotblothybridization. Each gradient fraction was expanded to1ml insucrosegradientbuffer (17). Equal volume aliquots of each gradient fraction were then diluted by the addition of1/2volof15XSSPE (2.23
MNaCl, 150mMNaH2PO4, and 15 mM EDTA, pH 7.0),furtherdiluted J.Clin. Invest.
©TheAmericanSociety for Clinical Investigation, Inc. 0021-9738/86/10/1125/05 $1.00
bytheaddition of formaldehyde to a final concentration of 6%, heated to60'C for 15min,and placed onice. Each sample was further diluted two-fold by the addition of 15X SSPE and applied in duplicate to a 15X SSPE-soaked nitrocellulose sheet mounted on a dot blot apparatus (Schleicher and Schuell Inc., Keene, NH). After sample application, filters wereair-dried, baked at80C for 2 h, prehybridized in a hybridization mix containing 50% formamide (21) for 3 h at420C,and asingle panel oftheblot washybridized with 3X106cpm of either the a- or
fl-globin
labeled cDNA probe.Afterhybridization, filters were washed twice for 15 min eachin 2X standardsaline citrate(SSC) (20), 0.1% sodium dodecyl sulfate (SDS) at room temperature, oncefor30 min in 0.03X SSC,0.1% SDSat500C, andrinsedin 0.03X SSCat roomtemperature. Before rehybridization ofthefilterswitholigomer probes, the filters were heatedto70'C for 20 min in50%6 formamide hybridizationmix and then washed threetimesin 2X SSCfor15min each atroomtemperature.The absence ofresidualsignalonthefilterswasconfirmedby autoradiographybefore rehybridization. For hybridization to oligomer probes, filters were pre-hybridized in hybridization mix without formamide (50 mM Hepes, pH 7.0, 3X SSC, 18
Ag/ml
sheared, denatured salmon sperm DNA, 40jig/
mlEscherichiacoli transfer RNA,0.1% SDS, and lOX Denhardt's [20]) for3 hat48°Cand thenhybridized for16 hat48°Cto 1 X 106cpm of either the al-ora2-globin oligomerprobe. Afterhybridization,the filterswerewashed threetimes for 15 min each in 2X SSC at 50°C. Filters wereautoradiographedat-70°C on XAR5 film(Eastman Kodak Co., Rochester,NY)withanintensifyingscreen(LighteningPlus; DuPont Instruments,Wilmington, DE).Autoradiographswereanalyzedby soft laserscanningdensitometry usingaZeinehscanner(modelSL-504-XL; Biomed Instruments, Fullerton, CA) with on-line computerintegrating software.Results
Washed
packed redcells
wereenriched for reticulocytes
on aPercol-Hypaque
density
gradient (16).
Anexample of the
frac-tionation is shown in
Fig.
1with whole blood (Fig.
1A) and
enriched
reticulocytes (Fig.
2B).
Inthe case ofthe
individual
studied
below,
thebeginning
reticulocyte
count was 15% andthe
reticulocyte
count inthe
enriched fraction
was85%.
Ahy-potonic
lysate
prepared from the
reticulocyte-enriched
fraction
was
applied
to a15-40%
sucrosegradient.
Anabsorbance
profile
of the
sucrosegradient fractionation
is shown in
Fig.
2 A. Twofractions,
Aand B,
comprise
the
pre-80S fraction of the
retic-ulocyte lysate.
Fraction
Acontains
globin
mRNPs and
globin
mRNA/40S ribosomal subunit complexes,
aswell
asfree
he-moglobin (which
accountsfor its
high
level of
ultraviolet
ab-sorbance).
Fraction B, marked
by
the
ultraviolet absorbance
peak
of the 60S ribosomal subunits (documented by
the presence of28S rRNA, data
notshown), also contains
globin
mRNPswith
sedimentation densities in this
region.
Fractions
1-5contain
actively
translating
mRNAs
with
one tofive ribosomes
permRNA
molecule.
Each
of
theindicated
gradient
fractions
wasanalyzed for
globin
mRNA contentby dot
blothybridization
(22).
a-globin
mRNAand
f3-globin
mRNAweredetected with
near-full-length
a-and
,B-globin
cDNAprobes (see
Methods).
The
specificity
of
these
probes for
a-orfl-globin
mRNA sequences was demon-stratedby their
specific hybridization
toplasmids containing
full-length
a-andfl-globin
cDNAs(Fig.
2B).
Autoradiography
of
nitrocellulose
filters dot blotted with
gradient
fractions
andhybridized with
theseprobes
(Fig.
2B)
reveals thedistribution
of
thea-andfl-globin
mRNAsin the
reticulocyte
lysate
gradient
fractions.
Anaccuratedirect
comparison
of
aand#
(or
a 1anda2)
mRNAlevelsis
notpossible using
this data,
asthespecific
activities of
theprobes
and theindividual
hybridization
condi-tions
are notprecisely balanced.
Intheanalysis
describedbelow,
A
A:' G ,5s.L.':
He
% ; #
*e as t or *: 4 :.
..Ak. .:
43>c
*.::, V
'm X I' s it ASKS } '8
4.: .. '.. A. look U
B
LS
A.,,':.HEV.A0
;l
40 Alm
...,
tar
IJ s:
f A E4. le -, : 4 I : Is Myra Vt a i. A. .:
.:, y
..:sA:
,,.t.4:: A:
ski'
ilC ..
A- He A.
:w?
*:. , he
q B w
w a;]
I:
T.I
0: ?I v
,4
4'
S.
1."
*4
.*,
Figure1.Isolation of
reticulocytes
from human whole blood. Reticu-locytestainsof (A)wholeblood,
and(B)
gradient-enriched
reticulo-cytes.
the
translational
profiles
of the differentglobin
mRNAsarean-alyzed by
comparing
the relative distributions of each of theglobin
mRNAsacrossthereticulocyte lysate gradient.
Theex-posures
shown
inFig. 2,
BandC,
wereselected
becausethey
are
similar
inintensity
and,
therefore,
allowadirect visualcom-parison
of
thedistributions ofthe
mRNAsstudied. Densitometric
analysis
of theautoradiographs
inFig.
2 B reveals that 32% ofthe total
a-globin
mRNAand 49% of the total,3-globin
mRNA
are
associated
with ribosomes(fractions
1-5),
reflecting
apref-erential
sequestration
of
a-globin
mRNAinto
thepre-80S
frac-tions.
Thedistributions of
a-and
f3-globin
mRNAs in theri-bosome-associated
fractions(1-5)
areshowninFig.
2 D(dashed
lines).
The
relative distributions
of thea-andfl-globin
mRNAsin these
gradient
fractions
werefurther
analyzed
by
dividing
the percentageof
a-globin
mRNAineach fraction
by
thecorre-sponding
percentage offl-globin
mRNA;
these ratiosareplotted
in
Fig.
2E(dashed line).
Theresultspresented
inFig.
2,
D and1126 S. H.Shakin and S.A.Liebhaber
f. f. .,:," 1. f. t... j. .1 '.
AV, iA
491 509
3-AGGACGTGGGCATGGGGGC-5' al-Oigomer
3'-GGAACGTGGCCGGGAAGGA-5' a2-Oigomer I a-obin mRNA
UAA (A)n
+427 +540
a-0a * a
A- *
A B 1 2 3 4
0
0
a I 5
al- BB
0
0
9
a2-
*
0
* * .#A B 1 2 3 4 5
Figure 3. al- anda2-globin oligomers.The base sequences and posi-tions of theal- anda2-globin oligomersareshown relativeto a-glo-bin mRNA. Thepositionsof the5'-terminal cap structure(CAP), ini-tiationcodon(AUG),termination codon(UAA),and3'-polyadenylate tail
((A),,)
ofa-globin
mRNAareshown. Theposition
+1 referstothe AoftheAUGinitiationcodon. Theregionofdivergenceof the al-anda2-globinmRNAswithinthe3'-nontranslated regionis indicated by the openhexagon.Dots between the sequences of the two oligo-mersindicatepositionsof sequence mismatch.al a2
40
I ~~~~~~oa
30 0 aA
L -~~~* ~~.
e9al
20
£
A
a2
10 0%
1 2 3 4 5
2.0
Q. oaf/
1.0
*al/a2
1.0 _
0.8 0.6
-0.4_
1 2 3 4 5
Figure 2.Analysis of globin mRNAs in human reticulocytelysate.(A) Absorbanceprofileat260nmOD ofsucrosegradient-fractionated humanreticulocyte lysate. Vertical lines indicate theextentsof each isolatedgradient fraction. Pre-80S fractions, A and B, and ribosome-associatedfractions, 1-S,areindicated. Fractionslabeled 1-5 contain mRNAsassociated with 1-5 ribosomespermRNAmolecule,
respec-tively. Thetopof the gradient istothe left. (B) Dot blot hybridization ofthe humanreticulocyte lysate fractionstoa-and
fl-globin
cDNAprobes. Each gradient fraction shown in panelAis dot blotted for de-tection ofglobin mRNAcontent;theidentity of each gradient fraction (left autoradiograph) is indicatedbelow each column of dots. Plasmids containinga-and
fl-globin
cDNAs (pMC18[18] and pSAR6 [19],re-spectively)arealso dot blotted(right autoradiograph)ascontrols. The
toprowofdots(a) is probed with radiolabeled a-globin cDNA; the
bottomrowof dots
(fl)
isprobed with radiolabeledfl-globin
cDNA. (C) Dot blot hybridization of human reticulocyte lysate fractionstoal-and a2-globin-specific oligomer probes. Thesamefilters described
inpanelB(left autoradiograph)arereusedafter elution ofthefirstset
ofprobes (see Methods). Plasmids containingal-anda2-globin
cDNAs(pH3alB and pH3a2A [23], respectively)arealso dot blotted
(right autoradiograph)ascontrols.Thetoprowofdots(al)isprobed
with theradiolabeleda-globinoligomer,the bottomrowof dots (a2)
is probedwith the radiolabeled a2-globin oligomer(seeFig. 3 for
oligomer probe sequences). (D) Distribution of globinmRNAsin ribo-some-associatedlysatefractions. For eachmRNAstudied,the
percent-ageofthetotalribosome-associated mRNA (sum ofmRNAin frac-tions1-5)presentin eachfraction is plotted.In eachcase,the
percent-agesof mRNA plotted in fractions 1-5 totals 100%.Thedistributions of totala-globinmRNAandjB-globinmRNA (data takenfrom panel B)areshownin dashed lines; the distributions ofal-globinmRNA anda2-globin mRNA (data taken from panelC)areshownin solid
E,reveal that
fl-globin
mRNA is distributedonlarger polysomes thana-globinmRNA.To specifically detect and quantitate al- and
a2-globin
mRNAs in
these
lysate fractions, we usedDNAoligomer probescomplementary
to the 3'-nontranslatedregions
of a 1- anda2-globin mRNA, respectively.
Thepositions
and base sequencesof these two
probes
areshowninFig.
3.Thespecificity
of theseprobes for the
al-and a2-globin mRNAs was demonstrated bytheir selective hybridization to plasmids containing the
3'-nontranslated
regions of
the al- anda2-globin mRNAs, pH3alB
(a
1),
andpH3a2A (a2)
(23), respectively (Fig.2C).Thenitro-cellulose dot blot filters shown
inFig.
2 Bwererehybridized
with these
probes after
elution of theoriginal probes (see
Meth-ods)
(Fig.
2
C).
25%
of the total
al-globin
mRNA and 26% ofthe total
a2-globin
mRNA were detected in ribosome-associatedfractions
1-5.The
distributions
of al- anda2-globin
mRNAsin
fractions
1-5 areplottedin
Fig.
2 D(solid
lines). The relative
distributions of the
al-and
a2-globin mRNAs
ineach gradient
fraction
werefurther analyzed by
dividing the
percentageof
al-globin mRNA in each fraction by the corresponding
percentageof
a2-globin mRNA; these ratios
areplotted
inFig.
2 E(solid
line). This plot reveals that equal
percentagesof al-globin
mRNA
and
a2-globin
mRNA are present in each of theretic-ulocyte lysate
fractions. In contrast to the different distributionsof
a-and
fl-globin
mRNAs
inthe
pre-80S fractions,
and acrossthe
polysome
profile,
this
analysis
demonstrates that the
twohuman
a-globin mRNAs have identical distributions in
retic-ulocyte lysate.
Discussion
Balanced
synthesis of
a-and
fl-globin
is critical
to the normaldevelopment and function of erythrocytes.
Inhumans,
f3-globin
protein is encoded by
asingle
fl-globin
gene(24, 25),while
a-globin
protein is encoded by
twohighly homologous a-globin
genes, al
and a2
(26-28). The levels of
a-and
f3-globin
protein
produced in
reticulocytes
therefore reflect
therelative
levelsof
expression
of
three separateloci.
Therelative
levelsof
mRNAlines.(E) Relative distribution of globin mRNAs in
ribosome-asso-ciatedlysatefractions. Therelativepercentagesofa-globinmRNA
and
(l-globin
mRNA(o)andofal-globinmRNAanda2-globinmRNA(-)ineachribosome-associatedgradient fractionwere
deter-minedasdescribedin thetextandareplottedon asemi-logarithmic
scale.
A
0.2
cm0 o 0.1
0 CAP AUG-37 +1
B
C
D
.-I
a:
E
.2
z
encoded by each of these genes cannot directly account forthe balanced synthesis ofa- and
ft-globin,
as each mRNA is expressed at a different level. In the reticulocytes of genetically normal individuals, total a-globin mRNA exceedsf3-globin
mRNA by 1.2-2.3-fold (29, 30), and the a-globin mRNA itself iscomposed of 2-3-fold more a2-globin mRNA than al-globin mRNA (13-15).Balanced synthesis ofa- andfl-globin,
therefore, iscritically dependent on the relative translational efficiencies of the three globin mRNA species. The excess of a-globin mRNA must be balancedby more efficient use offl-globin
mRNA, while the relative translational efficiencies of each of the two species of a-globin mRNA will determine their relative contributions to net a-globin synthesis. While previous studies cited above suggest more efficient translational use offl-globin
mRNA than a-globin mRNA,it
has not beenpossible
todetermine in asimilar
fashion the relative expression of the two a-globin mRNA species, as the protein products of these two mRNAs are identical (12, 14, 31).In
this
study,
we comparethetranslational profiles of
a1-,a2-,
and (3-globin mRNAs in human reticulocyte lysate by mRNA/cDNAhybridization
analysis. This approach allows di-rectand specific detection of al-, a2-, andfl-globin
mRNAsin bothtranslationally active polysomes andinpre-80S fractions.Our
results, consistent
with those ofprevious
studies based onprotein analysis, reveal both the preferential sequestration of
a-globin
mRNAinto pre-80S fractions
and the more efficientri-bosomeloading of(3-globin mRNA. In contrast, the comparison of al- and
a2-globin
mRNAdistributions demonstrates that these two mRNAs have identical translationalprofiles.
This latterresult
suggeststhat
the twoa-globin
genes areexpressed
at thesame
relative levels
astheir
respective
mRNA concentrations.In an
earlier
report, differences were demonstrated betweenthe translational activities
ofthe al- anda2-globin
mRNAsiso-lated from
anindividual with the
genotype(-
-lala2I2511)
(32).
Inthe
currentcomparison,
wefind
noevidence of
differ-ential
translation of the
normal al- anda2-globin
mRNAs. Thisdiscrepancy
maybe
resolved if wepostulate
that thepreviously
published
result may in fact reflectadirectnegative
effect ofthemissence
mutation,
a2125Pw
,onthe translational
activity of
a2-globin
mRNA.Thefindings
inthe present report, which suggestthe
equal
translation
of thetwoa-globin
mRNAs andacon-sequent
dominant role for the
a2-globin
gene in totala-globin
synthesis,
aresupported by
our recentgenetic analysis
ofeight
individuals with distinct
a-globin
structural
mutations;
thatstudy
demonstrates
that
structural mutantsencodedatthe a2-locusare, in
general, expressed
at a2-3-foldhigher
level thanthoseencoded
atthe al-locus
(33).
The
comparison
of the translational
profiles
of thetwohu-man
a-globin
mRNAsprovides
further
insight
intothe
molecularpathology of a-thalassemia. Deletions
orstructural
mutationsaffecting
either of the
a-globin
geneloci
(al
ora2)
can causean
imbalance
inglobin synthesis by decreasing
the total level ofa-globin
protein
produced
inerythrocytes
(for review,
seeref-erence
34). However,
the actualdegree
ofa-globin deficiency
and the consequentseverity
of
theresulting
a-thalassemia
de-pends
on a numberof factors.
Twowell-recognized
variablesthat
influence
thea-thalassemia phenotype
are the extent towhich
themutation
decreases theexpression of
theaffected
a-globin
gene(a°
vs.a'
thalassemia)
and theeffect,
if any,of
themutation
on theexpression of
theremaining intact a-globin
genes
(15).
Theresults
presented
inthis
report suggestathird
variable. As there appears to be no difference betweenthe trans-lational activities of the two normal human a-globin mRNAs, and sincea2-globin mRNA normally comprises the majority of a-globin mRNA in reticulocytes, the a2-globin genelocus can bepredicted to encode the majority of a-globin protein. The twoa-globin genes, therefore, assume different levels of impor-tance.While a mutation at the al-globin locus might haveonly aminor effect on a-globin synthesis, an identical mutation at the a2-globin locus would have a greater impact, andwould result inamore severea-thalassemia phenotype.
Acknowledgments
This work was supported in part by grant
1-ROI-AM-33975
from the National Institutes of Health (NIH). Susan Shakin is a trainee in the Medical Scientist Training Program, which is supported by grant 5-732-GM-07170from NIH.References
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