Dermabacter jinjuensis

(1)

Strain identifier

BacDive ID: 132563 DOI: 10.13145/bacdive132563.20191129.4.1

Type strain: yes Designation: 32

Culture col. no.: DSM 101003, NCCP 16133

Sections

Name and taxonomic classification Morphology and physiology Culture and growth conditions

Isolation, sampling and environmental informationarrow Molecular biology

Strain availability References

Name and taxonomic classification

Ref.: 24352 Domain Bacteria

Ref.: 24352 Phylum Actinobacteria

Ref.: 24352 Class Actinobacteria

Ref.: 24352 Order Actinomycetales

Ref.: 24352 Family Dermabacteraceae

Ref.: 24352 Genus Dermabacter

Ref.: 24352 Species Dermabacter jinjuensis

Ref.: 24352 Full Scientific Name Dermabacter jinjuensis Park et al. 2016

Ref.: 24352 Designation: 32

Ref.: 24352 Type strain: yes

Prokaryotic Nomenclature Up-to-date (PNU)

Ref.: 20215 Domain Bacteria

Ref.: 20215 Phylum Actinobacteria

Ref.: 20215 Class Actinobacteria

Ref.: 20215 Literature reference Int. J. Syst. Bacteriol. 47:479*

Ref.: 20215 Family Dermabacteraceae

Ref.: 20215 Literature reference Int. J. Syst. Bacteriol. 47:479*

Ref.: 20215 Genus Dermabacter

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Ref.: 20215 Literature reference Int. J. Syst. Bacteriol. 39:93

Ref.: 20215 Species Dermabacter jinjuensis

Ref.: 20215 Taxonomical status sp. nov. (VP)

Ref.: 20215 Literature reference Int. J. Syst. Evol. Microbiol. 66:2573*

Ref.: 20215 Full Scientific Name Dermabacter jinjuensis Park et al. 2016

Morphology and physiology

Ref.: 43946 Gram stain positive

Ref.: 43946 Cell shape rod-shaped

Ref.: 43946 Motility no

Ref.: 43946 Cultivation medium used

5 % sheep blood agar

Ref.: 43946 Colony size 0.5-1.0 mm

Ref.: 43946 Colony shape circular

Ref.: 43946 Colony color greyish-white

Enzymes Enzyme Enzyme activity EC number

Ref.: 43946 catalase + 1.11.1.6

Ref.: 43946 pyrrolidonyl arylamidase + 3.4.19.3

Ref.: 43946 alkaline phosphatase + 3.1.3.1

Ref.: 43946 alpha-galactosidase + 3.2.1.22 Ref.: 43946 beta-galactosidase + 3.2.1.23 Ref.: 43946 alpha-glucosidase + 3.2.1.20 Ref.: 43946 N-acetyl-beta-glucosamini dase + 3.2.1.52 Ref.: 43946 beta-glucosidase + 3.2.1.21 Ref.: 43946 alpha-mannosidase + 3.2.1.24 Ref.: 43946 beta-galactopyranosidase +

Ref.: 43946 arginine dihydrolase + 3.5.3.6

Ref.: 43946 leucine arylamidase + 3.4.11.1

Ref.: 43946 phenylalanine arylamidase

+

Ref.: 43946 tyrosine arylamidase +

Fatty acid profile

Type of FA analysis whole cell analysis

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Agar/liquid agar Incubation temperature (°C) 37 Incubation time (d)

Incubation pH

Incubation oxygen condition Treatment/condition

Software version Sherlock 6.1

Library/peak naming table TSBA6

FA_system MIS MIDI

FA_instrument Method/protocol Cutoff value

Reference Ref.: 43946

Fatty acid Percentage

anteiso-C13:0 0.51 anteiso-C15:0 28.46 anteiso-C17:0 29.66 C10:0 0.44 C12:0 0.74 C14:0 2.89 C16:0 5.5 C20:1ω7c 5.5 iso-C14:0 1.25 iso-C15:0 10.78 iso-C16:0 14.26

Halophily Salt Tested relation Salt conc.

Ref.: 43946 NaCl growth 0-6 %(w/v)

Metabolite utilization

Chebi ID Metabolite Utilization activity Kind of utilization tested

Ref.: 43946 27613 Amygdalin + builds acid from

Ref.: 43946 18305 Arbutin - builds acid from

Ref.: 43946 17057 Cellobiose - builds acid from

Ref.: 43946 15963 D-Adonitol - builds acid from

Ref.: 43946 17108 D-Arabinose - builds acid from

Ref.: 43946 18333 D-Arabitol - builds acid from

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Ref.: 43946 28847 D-Fucose - builds acid from

Ref.: 43946 12936 D-Galactose - builds acid from

Ref.: 43946 17634 D-Glucose + builds acid from

Ref.: 43946 17716 D-Lactose + builds acid from

Ref.: 43946 16899 D-Mannitol - builds acid from

Ref.: 43946 16024 D-Mannose - builds acid from

Ref.: 43946 16988 D-Ribose - builds acid from

Ref.: 43946 17924 D-Sorbitol - builds acid from

Ref.: 43946 16443 D-Tagatose - builds acid from

Ref.: 43946 65327 D-Xylose - builds acid from

Ref.: 43946 16813 Dulcitol - builds acid from

Ref.: 43946 17113 Erythritol - builds acid from

Ref.: 43946 Esculin ferric citrate + builds acid from

Ref.: 43946 5291 Gelatin - hydrolysis

Ref.: 43946 28066 Gentiobiose + builds acid from

Ref.: 43946 17754 Glycerol - builds acid from

Ref.: 43946 28087 Glycogen - builds acid from

Ref.: 43946 17268 Inositol - builds acid from

Ref.: 43946 15443 Inulin - builds acid from

Ref.: 43946 30849 L-Arabinose - builds acid from

Ref.: 43946 18403 L-Arabitol - builds acid from

Ref.: 43946 18287 L-Fucose - builds acid from

Ref.: 43946 62345 L-Rhamnose - builds acid from

Ref.: 43946 17266 L-Sorbose - builds acid from

Ref.: 43946 65328 L-Xylose - builds acid from

Ref.: 43946 25097 Lyxose - builds acid from

Ref.: 43946 Maltose hydrate + builds acid from

Ref.: 43946 6731 Melezitose - builds acid from

Ref.: 43946 28053 Melibiose + builds acid from

Ref.: 43946 320061 Methyl alpha-D-glu copyranoside

- builds acid from

Ref.: 43946 43943 Methyl

alpha-D-mannoside

- builds acid from

Ref.: 43946 74863 Methyl beta-D-xylo pyranoside

- builds acid from

Ref.: 43946 506227 N-Acetylglucosamin e

+ builds acid from

Ref.: 43946 Potassium 2-dehyd

ro-D-gluconate

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Ref.: 43946 Potassium 5-dehyd ro-D-gluconate

- builds acid from

Ref.: 43946 32032 Potassium gluconate

- builds acid from

Ref.: 43946 16634 Raffinose + builds acid from

Ref.: 43946 17814 Salicin - builds acid from

Ref.: 43946 28017 Starch - builds acid from

Ref.: 43946 17992 Sucrose + builds acid from

Ref.: 43946 27082 Trehalose + builds acid from

Ref.: 43946 32528 Turanose + builds acid from

Ref.: 43946 16199 Urea - hydrolysis

Ref.: 43946 17151 Xylitol - builds acid from

Ref.: 43946 Oxygen tolerance anaerobe

Culture and growth conditions

Ref.: 43946 Culture medium 5 % sheep blood agar

Ref.: 43946 Culture medium growth yes

Ref.: 24352 Culture medium TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92), 37°C, microaerophilic

Ref.: 24352 Culture medium growth yes

Ref.: 24352 Culture medium link https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium92. pdf

Temperatures Kind of temperature Temperature

Ref.: 43946 growth 20-45 °C

Ref.: 43946 optimum 30-40 °C

Ref.: 24352 growth 37 °C

Ref.: 24352 Temperature range mesophilic

pH Kind of pH pH

Ref.: 43946 growth 5.0-12.0

Ref.: 43946 optimum 7

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Ref.: 24352 Sample type/isolated from

closed pus of a patient having finger necrosis

Ref.: 24352 Geographic location (country and/or sea, region)

Gyeongsangnam-do Province, Jinju (35° 10' 35'' N 128° 5' 44'' E)

Ref.: 24352 Country Republic of Korea

Ref.: 24352 Continent Asia

Ref.: 24352 Geographic location 35.1764°/128.096°

Ref.: 43946 Sample type/isolated from

closed pus sample from a patient having finger necrosis in tertiary hospital located in Jinju, Gyeongsangnam-do, Korea

Ref.: 43946 Geographic location (country and/or sea, region)

Jinju, Gyeongsangnam-do

Ref.: 43946 Country Republic of Korea

Ref.: 43946 Continent Asia

Ref.: 43946 Geographic location 35.1764°/128.096°

Ref.: 43946 Enrichment culture 5 % sheep blood agar

Ref.: 43946 Enrichment culture duration

1 days

Ref.: 43946 Enrichment culture temperature

37 °C

Isolation sources categories

Cat1 Cat2 Cat3

#Infection #Inflammation

-#Infection #Patient

-#Host Body Product #Fluids

-#Host Body-Site #Limb #Hand

Molecular biology

Ref.: 43946 GC-content 62.58 mol% high performance liquid chromatography (HPLC)

Ref.: 24352 GC-content 62.58 mol% high performance liquid chromatography (HPLC)

Sequence database Sequence accession description Sequence accession number Sequence length(bp) Associated NCBI tax ID

Ref.: 24352 16S rRNA gene, Marker Gene (GenBank Direct submission)

Dermabacter jinjuensis strain 32 16S ribosomal RNA gene, partial sequence

KT036432 1390 1667168

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Ref.: 24352 Culture collection no. DSM 101003, NCCP 16133

Ref.: 24352 Strain history Y. K. Park, Korea Natl. Inst. Health (KNIH), South Korea; 32 <-Gyseongsang Nat. Univ. Hospital

References

Ref.: 20215 D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since.

Ref.: 24352 Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH; Curators of the DSMZ; DSM 101003

Ref.: 43946 Young Kyoung Park, Kyeong Min Lee, Woo-Kon Lee, Myung-Je Cho, Hye-Soo Lee, Yong-Gon Cho, Yoo Chul Lee, Won Kil Lee, Won Keun Seong, Kyu Jam Hwang Dermabacter jinjuensis sp. nov., a novel species of the genus Dermabacter isolated from a clinical specimen. IJSEM 66: 2573-2577 2016 (10.1099/ijsem.0.001092, None)

* These References are textmined