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Ccm3, a gene associated with cerebral cavernous malformations, is required for neuronal migration


Academic year: 2020

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Loss of function of cerebral cavernous malformation 3 (CCM3) results in an autosomal dominant cerebrovascular disorder. Here, we uncover a developmental role for CCM3 in regulating neuronal migration in the neocortex. Using cell type-specific gene inactivation in mice, we show that CCM3 has both cell autonomous and cell non-autonomous functions in neural progenitors and is specifically required in radial glia and newly born pyramidal neurons migrating through the subventricular zone, but not in those migrating through the cortical plate. Loss of CCM3 function leads to RhoA activation, alterations in the actin and microtubule cytoskeleton affecting neuronal morphology, and abnormalities in laminar positioning of primarily late-born neurons, indicating CCM3 involvement in radial glia-dependent locomotion and possible interaction with the Cdk5/RhoA pathway. Thus, we identify a novel cytoplasmic regulator of neuronal migration and demonstrate that its inactivation in radial glia progenitors and nascent neurons produces severe malformations of cortical development.

KEY WORDS: Radial glia, Neocortex, Nascent neurons, Cell autonomous function, Mouse, CCM3 (PDCD10)


Neuronal migration is one of the fundamental processes governing central nervous system development. In the mammalian cerebral neocortex, projection neurons are generated by progenitor cells residing in the ventricular and subventricular zones (VZ and SVZ, respectively) of the dorsal telencephalon and segregate by radial migration, eventually settling into distinct cell layers according to their birthdates (Angevine and Sidman, 1961). To migrate, early-born neurons send their leading processes directly to the marginal zone (MZ) whereas late-born neurons depend on radial glia, a transient cell type whose cell soma is in the VZ and whose long basal process spans the cerebral wall. Radial glia cells serve as both neural progenitors and a dynamic scaffold for migrating neurons (Rakic, 1972; Miyata et al., 2001; Malatesta et al., 2003; Noctor et al., 2004; Yokota et al., 2010).

Impaired neuronal migration invariably leads to cortical lamination defects and has been associated with mutations in several genes (e.g. Deuel et al., 2006; Koizumi et al., 2006; Bilgüvar et al., 2010), many of which encode components of two well-investigated pathways. The first consists of reelin, its receptors Vldlr and Lrp8 (also known as ApoER2), and its effector Dab1 (Rice and Curran, 2001); the second comprises Cdk5 and its neural-specific activators p35 (Cdk5r1 – Mouse Genome Informatics) and p39 (Cdk5r2 –


1Departments of Neurosurgery and Neurobiology, Yale Program on Neurogenetics, Yale School of Medicine, New Haven, CT 06520, USA. 2Department of Genetics, Yale School of Medicine, New Haven, CT 06520, USA.

*Author for correspondence (angeliki.louvi@yale.edu)

Received 20 December 2012; Accepted 22 January 2014

Mouse Genome Informatics) (Dhavan and Tsai, 2001; Su and Tsai, 2011) and appear to regulate, respectively, radial glia-independent somal translocation and radial glia-guided locomotion (Gupta et al., 2003; Ohshima et al., 2007; Franco et al., 2011).

Cerebral cavernous malformation 3 [CCM3; also known as programmed cell death 10 (PDCD10)], is one of three genes [krev1 interaction trapped gene 1 (KRIT1) (also known as CCM1), CCM2

and PDCD10] (Riant et al., 2010) that are mutated in familial CCM, a common neurovascular disorder characterized by the presence of cerebrovascular lesions (Russell and Rubinstein, 1989; Ozturk et al., 2011). CCM3 is a cytoplasmic protein that can be found in a complex with CCM1 and CCM2 (Hilder et al., 2007; Voss et al., 2007), and is thought to promote assembly of the Golgi apparatus in non-neuronal cell lines (Fidalgo et al., 2010; Kean et al., 2011). CCM1, CCM2 and CCM3 are expressed in endothelial cells and are essential for vascular development (Whitehead et al., 2004; Boulday et al., 2009; Kleaveland et al., 2009; Whitehead et al., 2009; He et al., 2010; Zheng et al., 2010; Chan et al., 2011; Yoruk et al., 2012). They are also expressed in pyramidal neurons and astrocytes (Guzeloglu-Kayisli et al., 2004; Seker et al., 2006; Tanriover et al., 2008); in cultured neurons, CCM3 is found throughout the cell body and processes, but is not enriched in the Golgi (Lin et al., 2010). Loss of CCM3 in neural progenitors has cell-autonomous (astrocyte activation) and non-autonomous effects (diffusely dilated cerebrovasculature and lesion formation) in postnatal brain (Louvi et al., 2011). CCM3 downregulation in cell lines and primary astrocytes enhances proliferation and cell survival (Chen et al., 2009; Louvi et al., 2011). For an overview of current models of CCM protein function, see Draheim et al. (Draheim et al., 2014).

We examine the role of CCM3 in cortical development by analyzing conditional mutants that either lack CCM3 in neural progenitors and their progeny (hGfap-Cre;Ccm3lox/loxand Emx1-Cre;Ccm3lox/lox) or retain CCM3 in radial glia and SVZ progenitors

but not in postmitotic neurons in the IZ and cortical plate ( NEX-Cre;Ccm3lox/lox). We show that CCM3 is specifically required in

neural progenitors and nascent pyramidal neurons that migrate through the SVZ and uncover cell-autonomous and non-autonomous functions in neuronal migration. Cortical lamination defects are underlain by radial glia abnormalities and resemble those of Cdk5

and p35mutants, suggesting a possible involvement of CCM3 in radial glia-dependent locomotion. We further demonstrate that CCM3 is necessary for cytoskeletal remodeling of postmitotic neurons, and that loss of CCM3 in neural progenitors results in RhoA activation in the brain.


CCM3 is necessary for cortical neuronal migration

In embryonic forebrain, Ccm3mRNA is expressed in the VZ and SVZ, which contain progenitor cells and newly postmitotic neurons migrating through the SVZ towards the cortical plate (Fig. 1A,B; supplementary material Fig. S1A-E,K,M,N). We crossed Ccm3lox/lox


, a gene associated with cerebral cavernous malformations,

is required for neuronal migration

Angeliki Louvi1,*, Sayoko Nishimura1and Murat Günel1,2


animals (He et al., 2010; Louvi et al., 2011) with Emx1-Cre (Gorski et al., 2002) and hGfap-Cre (Zhuo et al., 2001; Malatesta et al., 2003) mice to target neural progenitors and their progeny, respectively, in dorsal telencephalon at E9.5, or broadly in the CNS starting at E13.5. Loss of CCM3 expression in the conditional mutant animals was confirmed by in situ hybridization, immunostaining and western blotting (supplementary material Fig. S1E-G and data not shown) (Louvi et al., 2011).

We previously reported large brains or neocortices in hGfap-Cre;Ccm3lox/loxand Emx1-Cre;Ccm3lox/loxpostnatal and adult mice

(henceforth hGfap/Ccm3 cKOand Emx1/Ccm3 cKO) (Louvi et al.,


2011). Brain weights of cKOanimals were indistinguishable from controls in the first postnatal week [weight average±s.d.: control, 0.168±0.01789 g versus hGfap/Ccm3 cKO, 0.155±0.00707 g (P>0.05, P0)]; control, 0.284±0.01819 g versus hGfap/Ccm3 cKO, 0.29±0.01732 g (P>0.05, P6)]. No differences in cortical thickness between cKOand control animals were noticed at birth (P>0.05), which significantly increased from P7 onwards (Emx1/Ccm3 cKO, P7; P=0.01034, n=3; hGfap/Ccm3 cKO;P=0.01332, n=3). In Nissl-stained preparations, total neuron number in matched areas of somatosensory cortex (SSC) was similar in control and Emx1/Ccm3 cKO(P7 and P15, n=2 per age, P>0.05). To estimate neuronal cell

Fig. 1. Cortical lamination

abnormalities in Emx1/Ccm3 cKO

neocortex. (A) Ccm3mRNA is expressed in VZ/SVZ progenitors and newly postmitotic neurons migrating through the VZ/SVZ, but not in those migrating through the cortical plate at E13.5. (B) mRNA expression of Pax6(radial glia), Tbr2 (SVZ progenitors) and Tbr1 (newborn neurons) in serial sections from the same embryo as in A. In situhybridization as indicated. (C-L) In situhybridization of brain sections of control (C,E,G,I,K) and Emx1/Ccm3 cKO(D,F,H,J,L) littermates. Emx1/Ccm3 cKO mutants lack clearly defined cortical layers: subplate neurons (Ctfg; C,D) are in the middle of the neocortex; L6 neurons (Tle4;E,F) are superficial to the subplate in a broad diffuse area; L5 neurons (Er81; G,H) are dispersed in upper cortex; L4 neurons (Rorb; I,J) are distributed in the upper half of the neocortical wall and L2-4 neurons (Cux2; K,L) in its entire depth. Control brains are Ccm3lox/lox(C and inset) or

Emx1/Ccm3lox/+(E,G,I,K). (C,D) P7;

insets show high magnification of subplate neurons (P15); (E-L) P21. (M) The radial distribution of neurons expressing each marker is shown to the right of the respectivein situ hybridization panels. Bars with broken lines indicate that all neurons in the bin are labeled and could not be counted. In Emx1/Ccm3 cKO neocortex, early-born neurons are shifted towards more superficial positions (bins 1-5), whereas late-born neurons are distributed across the neocortical wall (bins 1-10); many remain in deep positions (bins 6-10). Scale bars: 0.5 mm.


size, we measured cell density in a defined area of SSC and calculated the mean cell area (field area per number of neurons); in

Emx1/Ccm3 cKO brains, the number of neurons was indistinguishable from controls (P7 and P15; n=2 per age) (e.g. mean neuronal cell area±s.d.: P7 control, 361.28291±53.37218 μm2

versus cKO, 346.97748±42.51494 μm2; P=0.51575).

Cortical organization was visualized using Nissl staining (supplementary material Fig. S1O-R) and in situhybridization with layer-specific markers [Ctgf(subplate); Tle4(subplate and L6); Er81

(Etv1– Mouse Genome Informatics) (L5); Rorb(L4) and Cux2 (L2-4)] indicated neuronal migration defects. Cortical lamination was severely disrupted in Emx1/Ccm3 cKOmutants: subplate neurons occupied a diffuse band near the middle of the neocortex (Fig. 1C,D,M); L5 and L6 neurons were displaced to the upper half (Fig. 1E-H, Fig. 2B,E), and those of L2-4 were dispersed either across almost its entire depth (L4) (Fig. 1I,J) or in the bottom two-thirds (L2/3) (Fig. 1K,L, Fig. 2H,K). These abnormalities were exacerbated in the significantly thickened cingulate cortex, persisting in mature animals (supplementary material Fig. S2A-J), suggesting that they were not due to developmental delay. Notably, the positions of deep layer neurons relative to each other were as in wild type, with L5 neurons located superficially to those of L6 (Fig. 1E-H); however, L2-4 neurons failed to migrate past them. Although layer order was maintained in hGfap/Ccm3 cKOmutants, where recombination is initiated after formation of the cortical plate and generation of early-born neurons from Ccm3-expressing progenitors, many late-born L2-3 neurons were broadly distributed and, consequently, layer borders were blurred (Fig. 2A,D,G,J; supplementary material Fig. S3A-J).

To examine the molecular properties of the Emx1/Ccm3 cKO

neocortex, we analyzed whether Satb2 and Ctip2 (Bcl11b – Mouse Genome Informatics), which mark non-overlapping populations of upper layer and L5 neurons (Arlotta et al., 2005; Alcamo et al., 2008; Britanova et al., 2008), became abnormally co-expressed. The number of cells positive for either marker was comparable in control and cKOat P0, P3 and P8 (n=2; P>0.05 for each age); however, their laminar distribution varied significantly [e.g. the upper one-third of the mutant neocortex at P3 contained fewer Satb2+cells

(P=0.02242) but more Ctip2+cells (P=0.00801) than the control].

Nevertheless, in mutants, as in controls, only a small fraction of cells

co-expressed both [respectively, 3.68% versus 5.02% (P3); 0.7% versus 0.33% (P8)], indicating that, despite ectopic positioning, mutant neurons were not molecularly respecified. Reelin-expressing Cajal-Retzius cells that could potentially contribute to cortical lamination abnormalities were normal (not shown).

We also generated hGfap/Ccm3Delta/lox and Emx1/Ccm3Delta/lox

animals, carrying one null (Ccm3Delta) and one conditional allele, by

crossing Ccm3Delta/lox(obtained by using ACTB-Cre) with hGfap-or Emx1-Cre;Ccm3lox/+mice. Cre is expected to target more efficiently

the single floxed allele, decreasing mosaicism. Lamination defects were more pronounced in hGfap/Ccm3Delta/lox and Emx1/ Ccm3Delta/lox, respectively, compared with hGfap/Ccm3 cKOand Emx1/Ccm3 cKOmutants (supplementary material Fig. S2K-T, Fig. S3K-T), representing an allelic series of different strengths (hGfap/Ccm3 cKO<hGfap/Ccm3Delta/lox<Emx1/Ccm3 cKO< Exm1-Ccm3Delta/lox). These observations suggest that CCM3 is necessary

for neuronal migration and that the severity of cortical lamination defects depends on developmental timing and extent of Ccm3

inactivation in neural progenitors.

CCM3 is required in radial glia cells and nascent neurons for proper migration

Our findings do not address whether CCM3 is independently required in radial glia and/or postmitotic neurons because, differences in onset of recombination notwithstanding, hGfap-Cre and Emx1-Cre lead to gene inactivation in both. We used NEX-Cre (Goebbels et al., 2006) to target postmitotic neurons in dorsal telencephalon. NEX-Cre;Ccm3lox/lox (NEX/Ccm3 cKO) embryos

maintained Ccm3 expression in VZ/SVZ progenitors (supplementary material Fig. S1H-N); the NEX-Cre and Ccm3

expression domains overlap in the outer SVZ at E13.5 suggesting that in early phases of NEX-Cre action, at least some Cre-positive, presumably nascent, neurons retain residual Ccm3 expression (supplementary material Fig. S1H,K,L). From E14.5 onwards, Ccm3

mRNA levels were clearly reduced away from the VZ (supplementary material Fig. S1M,N). NEX/Ccm3 cKO and

NEX/Ccm3Delta/lox mice were born at expected Mendelian ratios;


brain size and cortical thickness (NEX/Ccm3 cKO, P14, n=3) were indistinguishable from controls (P>0.05) and lamination was normal (Fig. 2C,F,I,L; supplementary material Fig. S4A-H), suggesting that

Fig. 2. Migration defects of upper and deep

layer cortical neurons in Ccm3 cKO

mutants.(A-L) In situhybridization of brain sections of control (A-C,G-I) and Ccm3 cKO mutant littermates [(D,J) hGfap/Ccm3 cKO; (E,K) Emx1/Ccm3 cKO; (F,L) NEX/Ccm3 cKO] with markers of deep [Er81(A-F)] and upper [Cux2(G-L)] layers at ages indicated. (A-F) L5 neurons are displaced superficially in Emx1/ Ccm3 cKO(E), but at deep positions in hGfap/Ccm3 cKO(D) and NEX/Ccm3 cKO(F) mutants, comparable with controls (A-C). (G-L) Subsets of L2-4 neurons reside in ectopic deep positions in hGfap/Ccm3 cKO (J) but in upper cortex in NEX/Ccm3 cKO(L) mutants, comparable with controls (G-I). In Emx1/Ccm3 cKO, the majority of L2-4 neurons are in deep positions, indicating severely disrupted migration (K). Scale bar: 0.5 mm.


CCM3 is required in radial glia progenitors but is dispensable in postmitotic neurons in the IZ and cortical plate for migration and positioning (Fig. 2). To further test this, we inactivated Ccm3in migrating neurons by in uteroelectroporation (IUE) using NeuroD -CreERT2to drive expression selectively in neurons (supplementary

material Fig. S5A,B). IUE of the neocortical wall of floxed Ccm3

(Ccm3lox/lox) embryos at E13.5 with NeuroD-CreERT2and a

Cre-responsive GFP-expressing construct (Stop-GFP) (Shim et al., 2012) indicated that co-electroporated neurons migrated normally, similar to those co-electroporated with pCAG-Cre (Matsuda and Cepko, 2007), driving expression in all cells, and with Stop-GFP, which served as controls (supplementary material Fig. S5C,D), consistent with observations in NEX/Ccm3 cKOanimals. Therefore, CCM3 deficiency in radial glia proper and likely nascent neurons in the VZ/SVZ is largely responsible for the migrational defects in hGfap/ and Emx1/Ccm3 cKOmutants.

Cell-autonomous function of CCM3 in maintaining radial glia morphology

In Emx1/Ccm3 cKOmutants positioning of late-born neurons, which depend on radial glia for migration, was disrupted, prompting us to examine the radial glia scaffold. Wild-type radial glia fibers labeled with rat-401 (nestin) spanned the cortical wall and were aligned perpendicular to the surface where end-feet anchored, but were irregular, wavy, less dense (often crisscrossing each other) and had fewer surface contacts in cKOmutants (Fig. 3A-D). DiI application onto the surface to label radial glia processes and their somata in the VZ (Malatesta et al., 2000) showed that fibers spanned the cortical wall at E13.5 in hGfap/Ccm3 cKO mutants (onset of recombination), but were disorganized at E15.5; hardly any cell bodies were labeled, suggesting that not many processes contacted the MZ (Fig. 3E-G); in the VZ, radial glia appeared normal (Fig. 3J,K). Staining of filamentous actin (F-actin) with falloidin revealed the characteristic honeycomb pattern at the ventricular surface in

hGfap/Ccm3 cKO and Emx1/Ccm3 cKO. Electron microscopy showed that the basal lamina was intact in Emx1/Ccm3 cKO

(supplementary material Fig. S6A,B); however, radial glia fibers oriented towards the surface were difficult to identify in upper cortical plate (Fig. 3H,I; supplementary material Fig. S6G,H), where neuronal cell bodies were irregularly arranged (supplementary material Fig. S6C,D,I,J). Mitotic figures in the VZ/SVZ and adherens junctions between VZ progenitors were normal (supplementary material Fig. S6E,F and Fig. S7A-C). These observations suggest that CCM3 regulates the morphology of radial glia basal processes.

To further test that CCM3 acts cell-autonomously in neural progenitors, we performed IUE of Ccm3lox/loxmice at E14.5 with

pCAG-Cre and pCAG-GFP. In electroporated, GFP-expressing, cells and their descendants, Ccm3is inactivated as a consequence of Cre expression; non-electroporated cells retain Ccm3expression. Analyses of mice at E16.5 (2 days post-IUE) revealed many GFP+

cells still in the VZ, suggesting that CCM3 is required for proper migration of newborn neurons; in embryos electroporated with pCAG-GFP, the majority of GFP+cells migrated away from the VZ

(Fig. 4A-C). Furthermore, IUE with pCAG-Cre and Stop-GFP at E13.5 showed that fewer neurons migrated into the cortical plate 3 days post-IUE compared with those electroporated with pCAG-GFP (Fig. 4D-F), likely due to morphological defects in surrounding Cre-expressing radial glia. The majority of cells electroporated only with pCAG-GFP developed leading processes directed towards the surface, whereas Ccm3mutant cells had short irregular processes (Fig. 4G-J). These observations suggest that CCM3 is

cell-autonomously required for development of radial glia processes, and that migration of neurons associated with defective radial glia is cell non-autonomously affected.

CCM3 does not affect neural progenitor proliferation

We examined whether Ccm3deletion affected division of radial glia by labeling dividing progenitors in late G2/M or S phase for phosphorylated histone H3 (PH3) or BrdU incorporation, respectively, at E12.5 to E15.5. At all stages, PH3+cells were lining


the ventricle, and, from E13.5 onwards, were also in the neocortical wall. No statistically significant differences in number of progenitors dividing in the VZ or at basal positions were found between control and Emx1/Ccm3 cKOorhGfap/Ccm3 cKObrains (n=3 per genotype and stage) (supplementary material Fig. S7A-C). The total number

Fig. 3. Radial glia defects in Ccm3 cKOmutants.

(A-D) Immunofluorescent staining of radial glia (nestin) reveals disorganized processes in Ccm3 cKOmutants (B,D) compared with controls (A,C). Radial glia processes contact the pial surface (A,C), but are irregular in hGfap/Ccm3 cKO(B, E16.5) and Emx1/Ccm3 cKOmutants (D, E14.5). Arrows in D indicate abnormally fasciculated axons. (E-G) DiI labeling of cortical radial glia. At E15.5 (E,F) DiI-labeled cell bodies can be visualized at the VZ in control (E, arrow) but not in hGfap/Ccm3 cKO(F) embryos (asterisk indicates the ventricular surface). At E13.5 (approximate onset of hGfap-Cre action) labeled radial glia fibers span the cortical wall (G). (H,I) Electron micrographs show radial glia fibers in upper cortical plate in Ccm3lox/+(H, arrow), but not in

Emx1/Ccm3 cKOlittermates at E14.5 (I). (J,K) Immunofluorescent staining of radial glia (nestin) reveals normal arrangement at the ventricular surface of E14.5 Emx1/Ccm3 cKO(K) and control littermates (J). Scale bars: 20 μm in A-D; 50 μm in E-G; 10 μm in H,I; 20 μm in J,K.


of BrdU+cells (1-hour pulse) was similar in control and Emx1/Ccm3 cKO embryos at E13.5 (n=5 per genotype) and E15.5 (n=3) (Student’s t-test, P>0.05), and in control and hGfap/Ccm3 cKO

embryos at E13.5 (1 or 3 hours, n=3), and their radial distribution was similar across all littermates analyzed (P>0.05, Mann-Whitney

U test) (supplementary material Fig. S7D,E,H,I,L). Neuronal birthdating [hGfap/Ccm3 cKO: E14.5 to P10 (n=2), E14.5 to 7 months (n=1), E14.5 to P7 (n=2), E16.5 to P2 (n=2); Emx1/Ccm3 cKO: E13.5 to P7 (n=2), E14.5 to P0 (n=2), E17.5 to P7 (n=4), E18.5 to P7 (n=2)] revealed comparable numbers of BrdU+cells in

control and cKO brains (P>0.05 for all comparisons between groups), but significantly altered laminar distribution, in agreement with in situ hybridization analysis (supplementary material Fig. S7F,G,J-L). Staining with Satb2 or Ctip2 and BrdU demonstrated that the percentage of BrdU+cells co-expressing either marker did

not differ significantly between brains from control and cKO

littermates, suggesting that production of different neuronal types is not altered in the Emx1/cKOmutants [E13.5 to P0 (n=4); E15.5 to P4 (n=5); P>0.05 for all comparisons] (supplementary material Fig. S7M). Staining with β-tubulin type III indicated no delays in neurogenesis (not shown). In cKOneocortex, therefore, progenitor proliferation and neurogenesis are not disrupted, neurons with the

same birthdate occupy different relative positions compared with normal, and the cytoarchitectonic defects are independent of the time of neuron origin. Our observations, which are indeed consistent with classic studies of the reelermouse, the archetype of cortical laminar defects (Caviness and Sidman, 1973), further suggest that increased neocortical (Emx1/Ccm3 cKO) or overall brain (hGfap/Ccm3 cKO) size – and the absence of such effects in

NEX/Ccm3 cKOmutants – is likely to be due to overproliferation of astrocytes postnatally, a notion supported by significant and progressive increase of GfapmRNA and protein levels (Louvi et al., 2011).

CCM3 affects neuronal morphology in vivo and in vitro

Defects in radial glia morphology, adhesion or polarity may or may not be associated with changes in neuronal and glial differentiation (Rašin et al., 2007; Cappello et al., 2012). We used IUE to introduce pCAG-GFP in the neocortical wall of littermates from crosses between Ccm3Delta/lox and Emx1/Ccm3lox/+ animals at E13.5 and

analyzed neuronal morphology 3 days post-IUE by fluorescence microscopy. GFP+cells were localized in the IZ and cortical plate


in control embryos; however, in cKO mice, most arrested in the SVZ/IZ and only a few reached the lower cortical plate with leading

Fig. 4. Cell-autonomous function of CCM3 in neural progenitors. (A-C) In utero electroporation (IUE) in the neocortical wall of Ccm3lox/loxembryos (E14.5)

with CAG-GFP (A) or CAG-Cre and CAG-GFP (B) plasmids, analyzed at E16.5. In the presence of Cre (B), migration of electroporated cells is delayed. (C) Quantification of radial distributions of GFP-expressing cells. In the presence of Cre, the distribution of labeled cells is shifted toward the VZ (bin 1 is at the ventricular surface and bin 10 at the MZ). Error bars represent s.e.m. Student’s t-test, *P<0.05. (D-J) IUE in the neocortical wall of Ccm3lox/loxembryos (E13.5)

with CAG-GFP (D,G,H) or CAG-Cre and Cre-responsive GFP (Stop-GFP) (E,I,J) plasmids, analyzed at E16.5. Following recombination, only a few GFP-expressing cells (thus, Cre-GFP-expressing) are in the cortical plate (cp), indicating delayed migration (E,I), compared with cells GFP-expressing GFP only (D,G). Quantification of the radial distribution of GFP-expressing cells from the outer IZ (bin 1) to the MZ (bin 5) (F). Significantly more Cre-expressing cells remain deep; GFP-only-expressing cells are in superficial positions. Error bars represent s.e.m. Student’s t-test, *P<0.05. High magnification of the leading processes of cells that have migrated into the cortical plate; compared with GFP-only-expressing cells, a large proportion of which extend long processes toward the cortical surface (89.43±6.44% in upper cortical plate), the leading processes of Cre-expressing cells are shorter and irregular, with a significant fraction (36.33±8.7%) displaying very short processes (H,J). Insets in G,I are low magnification views of G,H and I,J. Scale bars: 0.05 mm in A,B,D,E; 20 μm in G-J; 0.2 mm in insets (G,I).


processes extending toward the pia (Fig. 5A-D). Control neurons were multipolar at the pre-migratory zone, and bipolar at the upper IZ and cortical plate (Tabata and Nakajima, 2003; Noctor et al., 2004). A large proportion of Ccm3 cKOneurons (56.36±8.83%,

n=3) in the migratory zone were abnormal, many failing to transition into bipolar morphology, displaying multiple very thin processes (Fig. 5E,F). GFP-expressing axons extended tangentially within the IZ in controls, but were stunted in cKOlacking defined trajectories (Fig. 5G,H).

We established primary cortical neuronal cultures from

hGfap/Ccm3 cKO and Emx1/Ccm3 cKO at E13.5 to E15.5 and examined at 3, 5 and 7 days in vitro(DIV) (Fig. 5I-P; supplementary material Fig. S8). cKO neurons had multiple short neurites that resembled filopodia, revealed by Tuj1 or falloidin staining; many expressed MAP2, identifying them as dendrites, and were significantly shorter in the cKOneurons (Fig. 5I-N; supplementary

material Fig. S8A-G); doublecortin (DCX) staining indicated defects in the microtubule cytoskeleton (Fig. 5O,P). Golgi morphology and deployment, in part regulated by the CCM3 interactor STK25 (Matsuki et al., 2010; Ceccarelli et al., 2011; Xu et al., 2012), were normal (not shown).

Selectively labeled (Golgi-Cox impregnation) adult control neurons were polarized, with a long, thick apical dendrite extending toward the pia and multiple smaller dendrites arising from the soma, whereas neuronal arrangement lacked a recognizable pattern and dendritic development was abnormal in Emx1/Ccm3 cKOand to a lesser degree in hGfap/Ccm3 cKOmutants (Fig. 5Q-V and not shown). Finally, SMI32 and MAP2 staining revealed abnormal dendrites in NEX/Ccm3 cKOneocortex (not shown).


These observations indicate a defect of multipolar to bipolar transition in mutant neurons in vivo, consistent with morphological abnormalities in primary cultures. They also suggest that CCM3

Fig. 5. Abnormal cortical neuronal morphology in Ccm3 cKOmutants.(A-H) In utero electroporation (IUE) in the neocortical wall of Emx1/Ccm3 cKOand control littermates (E13.5) with the CAG-GFP plasmid, analyzed at E16.5 by fluorescence microscopy. (A,B) In control embryos (A), postmitotic neurons migrate into the cortical plate (cp) 3 days post-IUE; by contrast, many Emx1/Ccm3 cKOneurons remain in IZ (B). (C,D) In upper cortical plate, Emx1/Ccm3 cKOneurons are irregular and their leading processes do not reach the pial surface (D); control neurons are regularly arranged (C). (E,F) Migratory postmitotic neurons in upper IZ have transitioned into bipolar morphology (E; arrow indicates a leading process oriented towards the neocortical surface); however, Emx1/Ccm3 cKOneurons either remain multipolar or retain multiple short processes that are not oriented towards the pial surface [F; each of the four panels represents a different mutant neuron with distinct morphology; note multiple short processes (arrowheads)]. Neocortical surface is towards the top. (G,H) Low-magnification views of lateral neocortex showing axonal projections of electroporated neurons in control (G) and Emx1/Ccm3 cKO(H) littermates. Midline is towards the left. Axons extend towards the midline (G), but have irregular trajectories in the mutants (H). Insets are longer exposure views of axonal projections superimposed onto short exposure images of the electroporated hemisphere. (I-P) Morphology of primary cortical neurons. Immunofluorescent staining of neurons from Emx1/Ccm3 cKO(J,N) and hGfap/Ccm3 cKO(L,P) embryos, and control (I,K,M,O) littermates cultured for 3-5 days in vitro(DIV). (I,J) TUJ1 (I, control; J, Emx1/Ccm3Delta/lox); neurons isolated from E14.5 embryos at 5 DIV. (K,L) Falloidin staining of F-actin (K, control; L, hGfap/Ccm3 cKO); neurons

isolated from E13.5 embryos at 5 DIV. (M,N) MAP2 (M: control; N: Emx1/Ccm3 cKO); neurons isolated from E14.5 embryos at 3 DIV. cKOneurons (N) develop multiple shorter dendrites when compared with controls (M). See also supplementary material Fig. S8G. (O,P) DCX (O, control; P, hGfap/Ccm3 cKO); neurons isolated from E15.5 embryos at 5 DIV. (Q-V) Golgi-Cox staining of adult Emx1/Ccm3lox/+control (Q,S,T) and Emx1/Ccm3 cKO(R,U,V) brains. Dendritic trees

are evident throughout the control neocortex, especially in upper layers (Q,S,T), but are underdeveloped in cKO(R,U,V). (Q,R) Symmetrical views of dorsomedial neocortex oriented towards the midline; (S,U) medial parietal cortex; (T,V) SSC. In all panels, the cortical surface is towards the top. Scale bars: 0.05 mm in A,B; 20 μm in C,D; 10 μm in E,F; 0.05 mm in G,H; 0.02 mm in I-P; 0.2 mm in Q,R; 0.05 mm in S-V.


function is required for dendrite formation and that its loss disrupts the actin and microtubule cytoskeletons. This further indicates that, in addition to being essential in radial glia for neuronal migration, CCM3 is required cell-autonomously for neurite outgrowth.

Abnormal axonal trajectories in Ccm3 cKO mutants

Staining of axonal projections with 2H3 (Fig. 6A-H) revealed thin, ectopic and abnormally bifurcated bundles in Emx1/Ccm3 cKO(Fig. 6D,G,H) compared with controls (Fig. 6B,E,F). Cytochrome oxidase histochemistry (Fig. 6I-K) and Nissl staining (Fig. 6L-N) showed a disorganized (hGfap/Ccm3 cKO) or nearly absent (Emx1/Ccm3 cKO) barrel field (Fig. 6J,K,M,N), suggesting that post-synaptic L4 neurons failed to segregate. Thalamocortical axons immunostained with vGlut2 formed barrel-shaped bundles in control, were irregular in hGfap/Ccm3 cKOand failed to cluster in Emx1/Ccm3 cKO(Fig. 6O-Q). These observations suggest abnormal axonal projections.

RhoA activation in Ccm3 cKO mutant neocortex

CCM3 loss results in defects in neuronal migration and in actin and microtubule cytoskeletal remodeling, processes partly regulated by Rho GTPases (Heng et al., 2010; Govek et al., 2011; Kawauchi, 2011). Several observations suggest a possible interaction between RhoA and CCM (Crose et al., 2009; Whitehead et al., 2009;

Borikova et al., 2010; Stockton et al., 2010; Zheng et al., 2010; Louvi et al., 2011; McDonald et al., 2011; Cappello et al., 2012; McDonald et al., 2012). RhoAand Ccm3have similar expression in neocortex and are required in radial glia for neuronal migration (this study) (Cappello et al., 2012). Active, GTP-bound Rho was elevated 2.7-fold in hGfap/Ccm3 cKOmutants (E15.5, n=3) and 1.4-fold in

hGfap/Ccm3lox/+heterozygotes compared with controls (n=2) (Fig.

7A,B); whole-genome microarray analysis indicated a 1.43553-fold (P=0.00103957) RhoA upregulation in hGfap/Ccm3 cKO over control neocortex (n=3; P2), suggesting that RhoA activation may underlie the migrational and cytoskeletal defects in cKOneocortex.

Placing CCM3 in context: a connection with the Cdk5/p35 pathway?

Emx1/Ccm3 cKO,Cdk5and p35mutants (this study) (Ohshima et al., 1996; Chae et al., 1997; Gilmore et al., 1998; Kwon and Tsai, 1998; Ohshima et al., 2007; Hoerder-Suabedissen et al., 2009) have nearly identical cortical lamination defects and strikingly similar


Ctgf, Er81and Cux2profiles (Fig. 1D,H,L) (Ohshima et al., 2007; Hoerder-Suabedissen et al., 2009) raising the possibility of CCM3 interaction with the Cdk5/p35 pathway, which regulates actin and microtubule dynamics during neuronal migration, as well as dendritic development of pyramidal neurons (Xie et al., 2003; Kawauchi et al., 2006; Ohshima et al., 2007), processes also

Fig. 6. Abnormal axonal trajectories in

Ccm3 cKOmutants. (A-D) Immunofluorescent staining of axons (2H3) in control (A,B) and Emx1/Ccm3 cKO(C,D) or Emx1/Ccm3Delta/lox

littermates (A-D: E14.5; E-H: E16.5). In dorsomedial mutant cortex, axonal bundles appear thinner (C) and aberrant axonal tracts are ectopically located (arrow in D) near the pia and abnormally fasciculated (D) compared with controls (B). Abnormalities in fasciculation and bifurcation of afferent and efferent axons (E-H). F,H are high-magnification views of E,G. (I-Q) The barrel field (I,L,O) is poorly formed in hGfap/Ccm3 cKO(J,M,P) and absent from Emx1/Ccm3 cKO(K,N,Q) mutants. Tangential sections through L4 of flattened P15 (I-K), P22 (L-N) or P8 (O-Q) cortices processed for cytochrome oxidase (CO) histochemistry (I-K), Nissl staining of postsynaptic L4 neurons (L-N) and immunofluorescent staining (vGlut2) of thalamocortical afferent terminals (O-Q). Scale bars: in A, 500 μm for A,C; in B, 20 μm for B,D; in E,F, 50 μm for E-H; in I, 200 μm for I-N; in O, 200 μm for O-Q.


disrupted in the Ccm3 cKO mutants. Cdk5 modulates actin reorganization via RhoA suppression and regulation of cofilin activity (Kawauchi et al., 2006), and controls microtubule organization via FAK phosphorylation (Xie et al., 2003). A principal target of FAK is paxillin, to which CCM3 has been shown to bind (Li et al., 2010), and we previously detected highly abundant cofilin in lesions by RNA-Seq (FPMK average±s.d.: 101.6±7.3) (Louvi et al., 2011). Cofilin activity is regulated through phosphorylation (Ser 3); we observed an increase in inactive, phosphorylated cofilin in neocortical lysates from Emx1/Ccm3 cKO(1.2-fold at E13.5, n=3; 1.6-fold at P3, n=5) compared with controls, consistent with RhoA activation (Fig. 7C,D). Immunostaining showed increased p-cofilin immunoreactivity in the Emx1/Ccm3 cKOneocortex compared with control (Fig. 7E,F). By contrast, paxillin levels or phosphorylation were unaffected (not shown). These findings suggest that the Cdk5/RhoA/cofilin pathway is disturbed in the Ccm3 cKOmutants.


Here, we demonstrate that CCM3 is a crucial regulator of neuronal migration and that its inactivation in radial glia and nascent neurons produces severe neocortical malformations in a developmental time-dependent manner. CCM3 impacts on the actin and microtubule cytoskeletons, and is required for neurite outgrowth in vivoand in vitro. These functions appear to be mediated, at least partly, by RhoA activation.

The allelic series of Ccm3 cKO mutants display a spectrum of neuronal migration and positioning abnormalities (Fig. 8A-F). The normal cortical lamination of NEX/Ccm3 cKOand NEX/Ccm3Delta/lox

mutants implies that CCM3 is not required in late-migrating neurons in the IZ and cortical plate for radial glia-independent migration, or association with and detachment from CCM3+ radial glia. In

agreement with genetic findings, NeuroD-Cre-mediated deletion of

Ccm3 in postmitotic neurons has no obvious consequences on

migration. Because at early stages of NEX-Cre action, Cre+

(presumably newborn) neurons retain some CCM3 due to the delay in the effects of recombination on protein levels, whether CCM3 action is required in early-migrating neurons in the SVZ remains unknown. However, our finding that neuronal morphology is cell-autonomously affected suggests a role for CCM3 in neurite outgrowth, a process indeed initiated in early-migrating pyramidal neurons in the SVZ (Shoukimas and Hinds, 1978; Polleux and Snider, 2010), lending support to the notion that they require CCM3. Despite broad defects in Emx1/Ccm3 cKOand Emx1/Ccm3Delta/lox


mutants, L5 neurons still migrate past their predecessors, implying that migration of early-born neurons is not disturbed, even though both radial glia and neurons lack CCM3. By contrast, most L2-4 neurons, which largely employ glia-guided locomotion, fail to migrate past earlier-born neurons, pointing to CCM3-deficient radial glia as the underlying cause of migration defects. Considering that CCM3 is not required in late-migrating neurons, our findings suggest that CCM3 also has a cell non-autonomous function in radial glia, affecting interactions with postmitotic neurons during radial glia-guided migration, which are reminiscent of its cell non-autonomous functions in the neurovascular unit (Louvi et al., 2011). However, CCM3 also acts cell-autonomously, regulating the morphology of embryonic radial glia (this study) and of radial glia-derived postnatal astrocytes (Louvi et al., 2011). These cell-autonomous functions warrant further investigation, taking into consideration that CCM3 overexpression in vitroand in vivocauses cell death (Chen et al., 2009; Lin et al., 2010). Genetic rescue experiments that control for cell-type specific conditional re-expression of CCM3 at levels comparable to endogenous levels in mutant neocortex would need to be contrasted to the effects of focal and controlled overexpression of floxed CCM3 constructs introduced into the Ccm3 cKO neocortex by IUE. The latter approach will also allow us to observe the behavior of sparse

Fig. 7. RhoA activation in Ccm3 cKOmutant neocortex.(A) Western blot of neocortical protein extracts following a RhoA pull-down assay showing that activated Rho is elevated in hGfap/Ccm3 cKOneocortex at E15.5, compared with control samples. Total RhoA was used as loading control. Quantitative analysis indicates that activated RhoA is elevated 1.4-fold in hGfap/Ccm3lox/+heterozygotes and 2.7-fold in hGfap/Ccm3 cKOmutants when compared with

controls. Bars correspond to 25 kDa. (B) Histogram showing the quantification of the normalized signals obtained from A. Error bars represent s.e.m. (C) Western blot of neocortical protein extracts showing elevated ratio of inactive (Ser3 phosphorylated) cofilin to total cofilin in Emx1/Ccm3 cKOmutants. Quantitative analysis indicates that phospho-cofilin is increased 1.2-fold (E13.5; n=3) and 1.6-fold (P3; n=5) in Emx1/Ccm3 cKOmutants when compared with controls. Bars correspond to 25 kDa. (D) Histogram showing the quantification of the normalized signals obtained from (C). Error bars represent s.e.m. (E,F) Immunofluorescent staining of cortical neurons with phosphorylated cofilin shows more intense immunoreactivity in the neocortex of Emx1/Ccm3 cKO(D) when compared with control (C) (P3). Nuclei are counterstained with propidium iodide. Scale bar: 10 μm.


‘rescued’ cells in an otherwise mutant environment. Conversely, by overexpressing Cre recombinase in Ccm3lox/lox embryos, the

morphology and behavior of sparse Ccm3-mutant cells can be analyzed within the wild-type cortex, an extension of experiments reported herein. Performing IUE at various embryonic stages and analyzing the outcome at different times thereafter, will address whether the rescued neurons eventually settle at normal positions, thus allowing us to evaluate cell-autonomous versus cell non-autonomous functions of CCM3 in greater detail. Finally, it would also be informative to examine using mouse chimeras the relative contributions of CCM3-positive and -negative neurons in cortical layer development and positioning.

In hGfap/Ccm3 cKOand hGfap/Ccm3Delta/loxmutants, Ccm3is

initially maintained in progenitors and early corticogenesis is normal. At the onset of recombination, and presumably briefly, radial glia become transiently mosaic for Ccm3expression; as the exact timing of recombination (and, therefore, Ccm3inactivation) for any given cell is unknown, a neuron will stochastically attach to a radial glia fiber that might, or might not, still express CCM3, and do this until Ccm3has been inactivated in all progenitors. With the caveat of CCM3 protein stability unknown, the hGfap/Ccm3 cKO

animals will be useful for addressing interactions between newborn neurons and mosaic radial glia. Finally, we conclude that CCM3-dependent migration is required for laminar positioning per se, because in hGfap/Ccm3Delta/loxmutants, even though the preplate is

properly split and early-born neurons migrate normally, late-born neurons are mislocalized, displacing upwards those born earlier.

The dual cell-autonomous and cell non-autonomous function of a cytoplasmic protein in radial glia is counter-intuitive. Intracellular mediators may translate extracellular cues to modifications of the actin and microtubule networks, as well as cell-cell adhesion, both of which are modulated during neuronal migration (Marín et al., 2010). Therefore, CCM3 could control radial-glia-dependent neuronal migration non-autonomously by transducing extracellular signals to the intracellular migration machinery. Notably, LIS1, NDEL1 and their signaling partner 14-3-3ε, cytoplasmic proteins that regulate positioning of late-born neurons, have significant cell

non-autonomous functions in neuronal migration revealed via mosaic analysis with double markers (Hippenmeyer et al., 2010).

Ccm3is one of few genes known to be required exclusively in neural progenitors for migration, notwithstanding that only select key players have been tested independently in radial glia versus postmitotic neurons. For example, Cdk5 is required cell-autonomously in both (Hirasawa et al., 2004; Ohshima et al., 2007), Dab1 is required only in migrating neurons (Franco et al., 2011), whereas β1 integrins (Belvindrah et al., 2007) and RhoA (Cappello et al., 2012) are radial glia specific. Ccm3(this study) (Louvi et al., 2011) and Itgb1mutants display neuronal migration and cortical lamination defects (Graus-Porta et al., 2001; Schmid et al., 2004; Huang et al., 2006; Marchetti et al., 2010), pial detachment of endfeet (Graus-Porta et al., 2001; Kwon et al., 2011) and reactive gliosis (Robel et al., 2009), suggesting a – possibly indirect – interaction that warrants investigation, especially given the association of CCM1 with ICAP1α, which binds the β1 integrin cytoplasmic tail (Zawistowski et al., 2002; Faurobert et al., 2013). On the other hand, RhoA is necessary in radial glia to stabilize the actin and microtubule cytoskeletons, and to maintain the radial glia scaffold (Cappello et al., 2012); thus, our findings that RhoA is activated in Ccm3conditional mutants could partially explain the migration defects.

In future studies it will be important to test the hypothesis that CCM3 may generate signals in radial glia, which are then transmitted to neurons to facilitate migration, thus accounting for the cell non-autonomous effects we uncovered, to determine whether extracellular cues and signaling cascades regulate CCM3 activity to control radial glia-dependent locomotion and to elucidate mechanistic relationships with the Cdk5/p35 pathway.


Mice were maintained in compliance with National Institutes of Health guidelines and approval of the Yale University Institutional Animal Care and Use Committee. Ccm3loxmutants were reported previously (He et al., 2010;


Louvi et al., 2011). hGfap-Cre (Zhuo et al., 2001; Malatesta et al., 2003), Fig. 8. Summary of neuronal migration and positioning defects in Ccm3 cKOmutant neocortex.(A-F) Schematic drawings of the distribution of cortical pyramidal neurons in wild-type and Ccm3 cKOmice (P21). (A) Laminar positioning in wild-type mouse. (B) In hGfap/Ccm3 cKOmutants, cortical lamination is grossly normal. A subset of L2/3 neurons fails to migrate to the upper cortex. (C) In hGfap/Ccm3Delta/loxmutants, in which one Ccm3allele is deleted in all cells

and the other only in the radial glia lineage, most L5 neurons are displaced upwards near the pial surface; L4 neurons are distributed across the depth of the neocortex medially or displaced to the upper half laterally; upper layer neurons are dispersed across the neocortex. (D) In Emx1/Ccm3 cKOmutants, deep layer neurons are displaced upwards, whereas those of upper layers reside either across almost the entire depth of the neocortex (L4), or at its bottom two-thirds (L2/3); subplate neurons are confined to a diffuse median band. Most L2-4 neurons accumulate underneath L5/6. The relative positions of deep layer neurons are as in wild type, despite their ectopic location in upper cortex. (E) The Exm1/Ccm3Delta/loxmutants have a slightly more severe phenotype than the

Emx1/Ccm3 cKO, reflected in a broad neuronal dispersion across all cortical layers. (F) Normal laminar positioning in NEX/Ccm3 cKO(and NEX/Ccm3Delta/lox,

not shown) mutants. MZ, marginal zone; L, layer; SP, subplate; WM, white matter.


Emx1-IRES-Cre (Gorski et al., 2002) and ACTB-Cre (Lewandoski et al., 1997) mice were purchased from JAX. NEX-Cre (Goebbels et al., 2006; Belvindrah et al., 2007) mice were a gift from Drs Schwab and Nave (Max Planck Institute for Experimental Medicine, Goettingen, Germany).

In situ hybridization

Embryonic and postnatal brains were fixed, respectively, by immersion in or intracardial perfusion with 4% paraformaldehyde (PFA), post-fixed in 30% sucrose in 4% PFA and sectioned on a cryomicrotome (Leica Microsystems, Wetzlar, Germany). Sections were processed for in situ

hybridization as described previously (Tanriover et al., 2008). RNA probes complementary to mouse Ccm3(Louvi et al., 2011), Pax6(Götz et al., 1998), Tbr1and Tbr2(Englund et al., 2005), Tle4(Yao et al., 1998), Etv1

(Weimann et al., 1999), Rorb(Nakagawa and O’Leary, 2003), Cux2(Nieto et al., 2004; Zimmer et al., 2004) and Ctgf(Heuer et al., 2003) were labeled with digoxigenin-11-UTP. Sections were analyzed using a Stemi stereomicroscope or AxioImager (Zeiss, Oberkochen, Germany) fitted with an AxioCam MRc5 digital camera. Images were captured using AxioVision software (Zeiss) and assembled in Adobe Photoshop.

Immunostaining Sections

Fixed brains were cryoprotected in 30% sucrose in PBS, sectioned and processed free-floating. For 3,3′-diaminobenzidine (DAB) staining, sections were treated with 1% H2O2, washed in PBS and pre-incubated in blocking solution containing 5% normal donkey serum (Jackson ImmunoResearch Laboratories, West Grove, PA), 1% bovine serum albumin, 0.1% glycine, 0.1% L-lysine and 0.03% Triton X-100. Primary antibodies were added for 48 hours at 4°C, and secondary antibodies [raised in donkey (Jackson ImmunoResearch Laboratories; 1:250 dilution)] for 2 hours at room temperature; sections were processed with Vectastain ABC Elite (Vector Laboratories, Burlingame, CA) for 2 hours and developed using the DAB substrate kit for Peroxidase (Vector). For immunofluorescence, the H2O2 step was omitted; secondary antibodies were Alexa-Fluor conjugated (Molecular Probes; 1:500 dilution).


Primary neurons were fixed with 4% PFA for 15 minutes, washed with PBS, blocked, incubated with primary antibodies for 1 hour at room temperature, washed and incubated with Alexa-Fluor-conjugated secondary antibodies.


Rat-401 (1:100; developed by S. Hockfield, MIT, Cambridge, MA, USA) and 2H3 (1:300; developed by T. Jessell and J. Dodd, Columbia University, New York, USA) were both obtained from DSHB developed under the auspices of the NICHD and maintained by the University of Iowa, Department of Biological Sciences, Iowa City, IA. Other antibodies used were TUJ1 (1:500; Covance, Emeryville, CA; #MMS-435), MAP2 (1:1000; Sigma-Aldrich, St Louis, MO; #M4403), PDCD10/CCM3 (1:200; Sigma; #027095), DCX (C-18) (1:100; Santa Cruz Biotechnology, Santa Cruz, CA; #sc-8066), vGlut2 (1:300; Millipore, Billerica, MA; ab2251), Satb2 (1:300; Santa Cruz; #sc-81376), Bcl11b/Ctip2 (1:500; Abcam, Cambridge, MA; #ab18465), Cux1 (1:150; Santa Cruz; #sc-13024), phospho-cofilin (Ser-3) (1:1000; Cell Signaling Technology, Danvers, MA; #3311), phospho-Histone H3 (Ser-10) (1:2000; Cell Signaling) and BrdU (1:200; Beckton Dickinson, San Jose, CA; #347580).

Microarray analysis

Neocortices were dissected at P2 (n=3) and RNA was isolated using the RNeasy lipid tissue kit (Qiagen, Valencia, CA) and amplified using TotalPrep RNA Amplification kit (Applied Biosystems). Biotin-labeled cRNA for hybridization onto Illumina arrays was used according to Illumina protocols; arrays were scanned on the Illumina Iscan.

Cytochrome oxidase histochemistry

PFA-fixed neocortices were flattened and sectioned tangentially, and incubated with cytochrome C type III in the presence of DAB.

Golgi-Cox staining

Golgi-Cox staining was performed using the FD Rapid GolgiStain Kit (FD Neuro Technologies, Ellicott City, MD) according to the manufacturer’s instructions.

Western blot

Western blot was performed by standard methods. Antibodies used were cofilin (1:1000; Cell Signaling; #3312), phospho-cofilin (Ser-3) (1:1000; Cell Signaling; #3311) and PDCD10/CCM3 (1:300; Proteintech, Chicago, IL; #10294). ImageJ was used for quantification of bands.

BrdU labeling

Pregnant females were injected intraperitoneally with a solution of 5-bromo-2′-deoxyuridine (BrdU; 15 mg/ml in saline) at 20 mg/g of body weight. For embryonic stages (n=3 litters per genotype), litters were analyzed only if they contained a minimum of two control and two cKOlittermates. At least three (and up to six) matched sections were analyzed per embryo.

Layer distribution analysis

To quantify the distribution of neurons, the postnatal neocortex was divided radially into 10 equal-sized bins from the pia to the upper edge of the white matter. For embryonic analyses, the pia to the VZ (E13.5 and E14.5) or the upper edge of the intermediate zone to the ventricular zone (E15.5 and older) was divided radially into ten bins. The cells in each bin were quantified and reported as the percentage of total cells counted.

Quantitative analysis

Data were analyzed by two-tailed Student’s t-tests with a significance level of at least P<0.05 for all statistical comparisons. Numbers of replicates are given in the main text or figure legends. ImageJ/NeurphologyJ (Ho et al., 2011) was used for quantification of neuronal morphology.

DiI tracing

To label radial glia, crystals of the lipophilic dye DiI (Molecular Probes/ Invitrogen, Carlsbad, CA) were applied on the pial surface of fixed brains. The brains were stored in 4% PFA in the dark for 2-4 weeks to allow diffusion of the dye, then sectioned at a thickness of 100 μm using a vibratome.

RhoA activation assay

Active GTP-bound Rho was determined with a pull-down assay (Millipore, Temecula, CA; #17-294) according to the manufacturer’s instructions.

Primary cortical neuronal cell cultures

Primary cultures were established as described (Šestan et al., 1999) at plating density of 75×103/cm2on laminin/poly-L-ornithine-coated glass coverslips in 24-well plates.

In utero electroporation

All surgeries were performed using sterile conditions as described previously (Saito and Nakatsuji, 2001) and in accordance with an IACUC approved protocol. Plasmids used were NeuroD-CreERT2(a gift from N. Šestan, Yale University, New Haven, CT, USA), an expression vector that consists of a fragment of the mouse NeuroD promoter driving Cre expression in postmitotic premigratory neurons; Stop-GFP, a Cre-responsive GFP-expressing construct (Shim et al., 2012); and pCAG-Cre (Matsuda and Cepko, 2007).



Competing interests

The authors declare no competing financial interests.

Author contributions

A.L. designed and performed research, analyzed data and wrote the paper; S.N. performed research and analyzed data; M.G. initiated the studies on CCM and provided criticism.


This work was supported by a grant from the National Institutes of Health [R01-NS046521] and the Yale Program on Neurogenetics. Deposited in PMC for release after 12 months.

Supplementary material

Supplementary material available online at



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Fig. 1. Cortical lamination
Fig. 2. Migration defects of upper and deep
Fig. 3. Radial glia defects in Ccm3 cKO mutants.(A-D) Immunofluorescent staining of radial glia (nestin) reveals disorganizedprocesses in Ccm3 cKO mutants (B,D) compared with controls (A,C)
Fig. 4. Cell-autonomous function of CCM3 in neural progenitors. (A-C) with CAG-GFP (D,G,H) or CAG-Cre and Cre-responsive GFP (Stop-GFP) (E,I,J) plasmids, analyzed at E16.5


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