Affymetrix microarray
Celsius: a community resource for Affymetrix microarray data
... Initially, all public CELs identifiable at AEX and GEO were copied to UCLA by FTP mirror. This was performed in Janu- ary 2006 in bulk. Subsequently, additional data sources were added as institutions have been willing ...
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Probe Level Analysis of Affymetrix Microarray Data
... The use of GLM methodology brings an extensive literature to bear on microarray data anal- ysis, including such issues as design of experiments, sample size determination, and testing for specific types of ...
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Evaluation of high resolution microarray platforms for genomic profiling of bone tumours
... and Affymetrix microarrays, implying more robust ...and Affymetrix microarray platforms were found to be a better choice for mapping DNA copy num- bers in bone tumours, the latter having the ...
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Early developing pig embryos mediate their own environment in the maternal tract
... by Affymetrix microarray to identify the signals involved in this embryo-maternal ...sow. Microarray analysis showed that most of the transcripts differentially expressed were down-regulated in the ...
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DNA Microarray Data Analysis and Mining: Affymetrix Software Package and In-House Complementary Packages
... the Affymetrix microarray for example, there are two sub-steps in this process: reverse transcription of RNA to cDNA without labeling, then followed by in vitro transcription of cDNA to cRNA labeled with ...
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NuMA overexpression in epithelial ovarian cancer.
... A total of 35 samples were analysed by slot blotting. This cohort consisted of 7 established cell lines (JAMA-2, TR175, 1847, SW480, MCF-7, HeLa and SH-SY5Y), one benign sample (1153- A1) and 25 primary cultures. Lysates ...
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Whole transcriptome gene expression profiling in an epidermolysis bullosa simplex Dowling Meara model keratinocyte cell line uncovered novel, potential therapeutic targets and affected pathways
... high-throughput microarray analysis together with bioinformatics-assisted functional clustering and enrichment to identify 207 dif- ferentially expressed genes in the EBS-DM cell line ...from Affymetrix ...
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nuID: a universal naming scheme of oligonucleotides for Illumina, Affymetrix, and other microarrays
... company's microarray; and sometimes the same identifier is reused and represents a completely different oligo, resulting in ambiguity and potentially mis-identifi- cation of the genes hybridizing to that ...
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BioVLAB Microarray: Microarray Data Analysis in Virtual Environment
... 3) Clustering: Many genes in a microarray experiment may have no known protein functions previously. Also, genes with similar expression patterns may need to be studied as a group. Clustering has been widely used ...
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Estimating the similarity of alternative Affymetrix probe sets using transcriptional networks
... Networks were constructed as indicated [14] and are based on series of experiments (GSE) downloaded from GEO in September 2007. In order to take into account sampling effects that could bias the network structure, we ...
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Microarray analysis of NSAIDs-treated cardiomyocytes to search for genes involved in COX-2 inhibitor cardiotoxicity
... Total RNA was isolated using TRIZOL reagent. A portion of the RNA was electrophoresed on an –agarose-formaldehyde gel to verify RNA quality according to the reference value used for the cDNA microarray with a ...
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Salvaging Affymetrix probes after probe level re annotation
... by Affymetrix, as long as there is no conflict with the Brainarray ...original Affymetrix annotation, we made the origin of probe-set definitions in the Hybrid CDFs tracea- ble by extensions on probe-set ...
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Hybridization and amplification rate correction for affymetrix SNP arrays
... To the best of our knowledge, existing methods only address one or two of the three factors discussed above. In this study, we developed a novel CNV detection pipe- line based on hybridization and amplification rate ...
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Role of biotechnology in cancer control
... is microarray used for comparison level of expression of thousand genes ...The microarray analysis helps in identification of known genes playing role in cancer which in turn lead in identification of new ...
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Effects on linkage analyses of different Affymetrix expression measures as quantitative trait phenotypes
... [2], Microarray Suite Analysis (MAS5) [3] and dChip [4] are four commonly used gene expression measures that differ in their approach to background correction, nor- malization, and summarization of probe ...
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Development and application of a microarray meter tool to optimize microarray experiments
... evaluating microarray quality, prior to hybridization including staining with dimeric cyanine dyes, hybridization with a universal primer or tar- get, hybridization with fluorescently labeled random oli- ...
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KinSNP software for homozygosity mapping of disease genes using SNP microarrays
... The parameters for the homozygosity analysis are specified in the ‘Analysis Settings’ window shown in detail in Figure 2. The user should specify the studied disease, choose the specific chips (individ- uals) in which to ...
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Assessment of the relationship between signal intensities and transcript concentration for Affymetrix GeneChip®arrays
... Background: Affymetrix microarrays have become increasingly popular in gene-expression studies; however, limitations of the technology have not been well established for commercially available ...
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CAPITALBIO MICROARRAY SERVICES
... CapitalBio Microarray Platform: different microarray applications were printed with a SmartArrayer 136 microarrayer spotter, arrays were then hybridized in the active BioMixer II hybridizer and then signals ...
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EVALUATION OF INTRUSION DETECTION TECHNIQUES IN MOBILE AD HOC NETWORKS
... With the rapid development of computer and information technology, an enormous amount of data in science and engineering had been generated in massive scale. Also, the diversity of data, the data mining tasks and ...
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