Analyses of bacterial community dynamics and diversity
Network analyses of proteome evolution and diversity
... 2 Much of our understanding of biology comes from studying naturally occurring variation within and between organisms. The content and expression levels of proteomes vary significantly between species, as well as ...
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JAGUC - A SOFTWARE PACKAGE FOR ENVIRONMENTAL DIVERSITY ANALYSES
... “gold standard” for this strategy was the cloning and Sanger sequencing of amplified target genes, usually restricted to a few hundred sequences per sample due to relatively high costs and labor intensity. The recent ...
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Spatiotemporal dynamics of the bacterial community in the German Bight
... the bacterial community and its driving forces in the German Bight is ...the bacterial community composition changes gradually as well from riverine to marine habitats as shown by other ...
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Functional dynamics of bacterial species in the mouse gut microbiome revealed by metagenomic and metatranscriptomic analyses
... In order to profile the abundance of functional genes, genes were predicted from both the metagenomic and the metatranscriptomic data sets, and mapped against the KEGG protein database [26]. The number of non-redundant ...
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Bacterial community structures in the Arctic Ocean: the effect of increased carbon load on nutrient competition and bacterial diversity
... on bacterial community dynamics might further bolster the positive correlation between carbon complexity and bacterial community diversity observed ...
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Bacterial Community Composition and Dynamics Spanning Five Years in Freshwater Bog Lakes
... of bacterial communi- ties in the epilimnion and hypolimnion and the association of lake mixing frequency with community ...recovering diversity once stratification was reestablished (11, ...lake ...
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Investigating exudate- and habitat-mediated effects of phytoplankton on lake bacterial community dynamics
... glycolate. Diversity and dynamics of glycolate-utilizing bacteria were characterized in six lakes using functional gene glycolate oxidase subunit D ...taxonomic diversity and contained many sequences ...
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Impact of Land Use on Bacterial Diversity and Community Structure in Temperate Pine and Indigenous Forest Soils
... in bacterial community structure in response to disturbance of natural hardwood and secondary coniferous forest soils in central ...sequencing analyses to detect shifts in the soil microbial ...
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Comparative Analyses of the Bacterial Microbiota of the Human Nostril and Oropharynx
... for analyses comparing the communities (e.g., beta diversity). As mentioned in the results, the exact number of taxa detected by the microarray is best viewed as an estimate. That said, both the nostril and ...
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Ecosystem Resilience and Limitations Revealed by Soil Bacterial Community Dynamics in a Bark Beetle Impacted Forest
... soil bacterial community and associated functionality beneath beetle-killed lodgepole pine was influenced by the extent of surrounding tree ...active bacterial community, where alpha ...
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Bacterial community dynamics in a swine wastewater anaerobic reactor revealed by 16S rDNA sequence analysis
... specific bacterial and archaeal groups that can tolerate or even take advantage of a higher concentration of acetate and volatile fatty acids increase in dominance and may help to stabilize the ...overall ...
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Response of Soil Bacterial Community Diversity and Composition to Time, Fertilization, and Plant Species in a Sub-Boreal Climate
... FIGURE 5 | Boxplot (n = 48) of temporal change of the most abundant phyla (class) in a sub-boreal pasture. The abundances are defined based on 16S rRNA amplicon sequencing of soils from a split-plot field experiment with ...
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Bacterial community dynamics in an anoxic-aerobic membrane bioreactor - impact on nutrient and trace organic contaminant removal
... The bacterial community in different redox regimes of an anoxic-aerobic MBR under different operating conditions was investigated using ...the bacterial communities in these reactors were highly ...
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Dynamics of the Bacterial Community Associated with Phaeodactylum tricornutum Cultures
... four bacterial families as major players within the microbiome suggests specific roles depending on environmental ...population dynamics, thus indicating that our hypotheses regarding the molecular ...
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Bacterial Community Structure and Diversity of Closely Located Coastal Areas
... Abstract Bacterial community structure and diversity of two closely located stations are usually considered similar which can be verified by more intensive investigations using relatively large ...
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Early development of bacterial community diversity in emergently placed urinary catheters
... Comment Culture and TRFLP analysis of 8 urinary catheters placed for acute trauma resuscitation and left in place between 1 and 16 days showed rapid development of complex mi- crobial community structures that ...
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Long-term agrichemical use leads to alterations in bacterial community diversity
... the bacterial communities (Figure ...decrease bacterial diversity through elimination of certain bacterial taxa such as some actinobacterial ...
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Salinity and Bacterial Diversity: To What Extent Does the Concentration of Salt Affect the Bacterial Community in a Saline Soil?
... the bacterial community structure and diversity in the A horizon of a natural saline soil located in Sicily ...and diversity of microbial taxa using a spatial scale that revealed physical and ...
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Reserve Size And Fragmentation Alter Community Assembly, Diversity, And Dynamics
... to community assembly became stronger, a species richness decreased, and g richness in- ...stochastic community variation, greater a richness, and lower g richness than in small reserve ...a ...
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Thanatomicrombiome dynamics: bacterial community succession in the human mouth throughout decomposition
... methods of determining the PMI by using information that is inherent to the body itself would be invaluable for forensic investigators. 5,6 While decomposition is often described in terms of stages and PMI is measured on ...
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