Assigning differentially expressed genes to functional categories
Screening and functional analysis of differentially expressed genes in EBV transformed lymphoblasts
... many genes and pathways changes between virus and host ...regulatory genes screened from EBV-transformed lymphoblastoid cell lines (LCLs) need to be further ...
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Identifying Differentially Expressed Genes for Time-course Microarray Data through Functional Data Analysis
... of differentially expressed (DE) genes across two conditions is a common task with ...all genes and select differently expressed ...new Functional Principal Component (FPC) ...
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IDENTIFICATION OF DIFFERENTIALLY EXPRESSED GENES USING BI CLUSTERING
... Keywords: Bioinformatics, Raw data, analysing, Preprocessing, Clustering, Bi-clustering INTRODUCTION Basically Bioinformatics is a field in which biology, computer sciences,information technology, statistics, mathematics ...
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Functional Analysis of Genes Differentially Expressed in the Drosophila Wing Disc: Role of Transcripts Enriched in the Wing Region
... of genes differentially expressed in the Drosophila wing imaginal disc, which gives rise to two distinct adult structures: the body wall and the ...uncharacterized genes first identified in a ...
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Description: Functional categories of significantly differentially expressed transcripts affected in SW620 cells treated with TTA (75 µm) for 24
... Description: Functional categories of significantly differentially expressed transcripts affected in SW620 cells treated with TTA (75 µM) for 24 h, as determined by Affymetrix microarra[r] ...
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Verification of genes differentially expressed in neuroblastoma tumours: a study of potential tumour suppressor genes
... cer-realted genes such as BRCA1 and TP53 ...be expressed at a higher level in primary tumours of higher stages, espe- cially in stage 3 tumours correlating negatively with MNA ...
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Microarray data quality control improves the detection of differentially expressed genes
... Here, we focus on quality metrics aimed at identifying outlier arrays. They can be divided into two categories: relative and absolute. Relative quality metrics compare each array's intensities against those of ...
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Identification of Differentially-expressed Genes in Intestinal Gastric Cancer by Microarray Analysis
... patterns, functional annotations and clinical characteristics that were associated with ...of genes involved in functional pathways associated with gastric mucosal barrier function and gastric ...
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Identification of differentially expressed genes in the development of osteosarcoma using RNA-seq
... Materials and Methods: The mRNA expression profiling of 20 subjects was obtained through high-throughput RNA-sequencing. DEGs were identified between primary OS and normal Control, and between primary OS and metastatic ...
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Identification of differentially expressed genes in pathways of cerebral neurotransmission of anovulatory mice.
... This finding suggests that the GABAergic system may play a role in forms of hypothalamic infertility; however, there is some controversy on whether the GABAergic activity, a known inhibitory pathway, can inhibit GnRH ...
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Data Mining in Networks of Differentially Expressed Genes during Sow Pregnancy
... and functional criteria ...Analyzing genes expression difference of these two tissues in different pregnant periods could be helpful to under- stand pregnant ...the functional adaptation of the ovary ...
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Effect of hyperoside on cervical cancer cells and transcriptome analysis of differentially expressed genes
... downregulated genes were identified after RNA-Seq. After functional enrichment, 74 gene ontology biological processes and 43 Kyoto Encyclopedia of Genes and Genomes pathways were ...key genes ...
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Identifying Differentially Expressed Genes in Unreplicated Multiple-Treatment Microarray Timecourse Experiments
... select genes according to their time- course ...the genes into as many categories as there are candidate ...select genes only if their fit to the best candidate is stronger than the fit that ...
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Positional clustering of differentially expressed genes on human chromosomes 20, 21 and 22
... Differential Gene Expression To assess its differential expression in a tissue category and for a given group (DIZ, INF or ADLT), every contig was compared to the total EST set of this group at high stringency ...
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Identification of aberrantly methylated differentially expressed genes targeted by differentially expressed miRNA in osteosarcoma
... several differentially methylated genes (DMGs) and differentially expressed genes (DEGs) in OS through bioinformatics analysis ...and differentially expressed miRNAs ...
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Pomelo II: Finding differentially expressed genes
... regulated genes in each two- class comparison and their intersection ...of genes that are up regulated in both the contrast between classes 0 and 1 and the contrast between ...
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Statistical methods for ranking differentially expressed genes
... Background Microarray technology has revolutionized modern biological research by permitting the simultaneous study of genes com- prising a large part of the genome. The blessings stemming from this are ...
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Identification of Differentially Expressed Genes in Papillary Thyroid Cancers
... specific genes, including tumor suppressor genes, oncogenes, apoptosis-associated genes and other predisposing ...However, genes, signaling pathways, and other basic mechanisms are cur- rently ...
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Detection of differentially expressed genes involved in osteoarthritis pathology
... TWIST1 can regulate FOS expression in the transcrip- tional regulatory network, and TWIST1 and FOS interact with each other in the PPI network. Kinne et al. found that compared to patients with OA or normal joints, c-fos ...
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Analysis of Differentially Expressed Genes in Neuroendocrine Carcinomas of the Lung
... of Differentially Expressed Genes in Neuroendocrine Carcinomas of the Lung Chigusa Okubo, MS,* Yuko Minami, MD,*§ Ryota Tanaka, MD,* 兩兩 Teruhito Uchihara, MD,*¶ Yoichi Anami, MD,* Shuichiroh Furuya, ...
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