Bacterial and archaeal functional expression changes in
Different Responses of Bacterial and Archaeal Communities in River Sediments to Water Transfer and Seasonal Changes
... Responses of bacteria and archaea with 15 highest abundance to the water diversion or seasonal.. 231.[r] ...
19
Constant relative rate of protein evolution and detection of functional diversification among bacterial, archaeal and eukaryotic proteins
... Conclusions The present results show that the mode of evolution of the vast majority of the analyzed proteins from all three domains of life - bacteria, archaea and eukaryotes - is compatible with the rate-constancy ...
9
Functional Genomics Analysis of Extremely Thermophilic Fermentative Microorganisms from the Archaeal Genus Pyrococcus and Bacterial Genus Caldicellulosiruptor.
... the functional genomics analysis and growth physiology studies of DSM 3638 and the mutant, an alteration in the methionine biosynthesis pathway appears to have prolonged exponential phase, leading to increased ...
195
Exploring the functional constraints on bacterial essential gene expression with CRISPRi
... Appendix 3 we discuss a small proof-of-concept using trimethoprim. Pooled-growth assays under very low doses of trimethoprim reveal the expected outcome that dfrA and other genes involved in folate metabolism are much ...
196
The contribution of culturomics to the repertoire of isolated human bacterial and archaeal species
... correlate changes with colorectal cancer [9], and the gut micro- biome has been suggested to play an important role in inflammatory bowel diseases such as Crohn’s disease, where a decrease in obligate anaerobes ...
11
Functional analysis of archaeal MBF1 by complementation studies in yeast
... use bacterial-like pro- teins to regulate an eukaryotic-like transcription ...the archaeal and eukaryal ...chimeric archaeal/eukaryal MBF1 ...
17
Genomics and prevalence of bacterial and archaeal isolates from biogas-producing microbiomes
... analyzed bacterial strains were recently described as new species and even genera, namely Herbinix hemicellulosilytica T3/55 T , Herbinix luporum SD1D T , Clostridium borni- mense M2/40 T , Proteiniphilum ...
22
Recent Advances and Future Prospects in Bacterial and Archaeal Locomotion and Signal Transduction
... gene expression, and environmental stimuli affect the behavior of a single cell and its performance? How do these individual actions affect the population? The origin of that variability and how it is controlled ...
17
Genomics of bacterial and archaeal virus isolates from extreme aquatic environments
... the functional analogues shared with bacteriophages, haloarchaeal tailed virus HGTV-1 was suggested to have a genome shuffling mechanism reminiscent of that in T4-like phages (Arbiol et ...between bacterial ...
57
The functional consequences of age-related changes in microRNA expression in skeletal muscle
... mRNA expression profiling in skeletal muscle of adult and old mice The tibialis anterior muscles (30–40 mg each) from adult and old mice were dissected and RNA was isolated using Trizol as described ...
14
Biogenesis pathways of RNA guides in archaeal and bacterial CRISPR Cas adaptive immunity
... vivo Expression of Type I crRNAs has been demonstrated amongst others in Sulfolobus solfataricus and Thermoproteus tenax (I-A), Clostridium thermocellum and Methanococcus maripaludis (I-B), ...
14
Bacterial and Archaeal Viruses of Himalayan Hot Springs at Manikaran Modulate Host Genomes.
... of bacterial genomes, thus we applied an iterative assembly strategy using PRICE assembler to overcome the coverage bias (Ruby et ...for functional completeness by calculating the functional ...
16
Rapid succession of uncultured marine bacterial and archaeal populations in a denitrifying continuous culture.
... Although the general trend in changes over time was consistent for metagenomic and CARD-FISH data, the different approaches sometimes yielded different esti- mates of community composition. Data obtained by ARISA ...
12
A Review on Molecular Functional and Structural Characterization of Human Cysteine Cathepsins in Bacterial Expression Systems
... and functional characterization studies of Cathepsin L were performed by means of inducing mutations specifically, in either the propeptide portion or the carboxyl terminal light chain of the protein and the genes ...
24
Changes in proHB-EGF expression after functional activation of the immune system cells
... The functional differences between mac- rophages and B cells underlie different responses of these cells to activating ...sHB-EGF expression in response to such activating factors as an increase in cell ...
8
Taxonomy of prokaryotic viruses: 2017 update from the ICTV Bacterial and Archaeal Viruses Subcommittee
... 4. New taxa. Table 2 lists of all new taxa proposed at the ICTV EC49 meeting in Singapore in 2017. In total, two new families, eight new subfamilies, 34 new genera, and 91 new species were proposed. Two significant items ...
7
Bacterial and archaeal community structure across a gradient of saline lakes in Kiritimati, Republic of Kiribati
... 15 differences (Figure 7). Positive log2-fold changes in Figure 7 reveal OTUs that are more abundant in hypersaline lakes, while the negative values indicate those that are less abundant. More simply put, positive ...
47
Taxonomy of prokaryotic viruses: 2017 update from the ICTV Bacterial and Archaeal Viruses Subcommittee
... 4. New taxa. Table 2 lists of all new taxa proposed at the ICTV EC49 meeting in Singapore in 2017. In total, two new families, eight new subfamilies, 34 new genera, and 91 new species were proposed. Two significant items ...
7
ANNOgesic: a Swiss army knife for the RNA-seq based annotation of bacterial/archaeal genomes
... Here, we demonstrated the performance of ANNOgesic by applying it on two published datasets and comparing the results to manually conducted annotations. ANNOgesic could detect 90% and 83% of the manually annotated sRNAs ...
11
Dynamics and distribution of bacterial and archaeal communities in oil-contaminated temperate coastal mudflat mesocosms
... Fig.2 Changes in Total Petroleum Hydrocarbon (TPH), alkane and PAH values concentration in the mudflat sediments a. Relative TPH abundance computed by normalising TPH values to that of internal marker ...
39