EST-SSR marker
An EST SSR marker, bu099658, and its potential use in breeding for yellow rust resistance in wheat
... bp EST-SSR marker may significantly enhance the selection of wheat geno- types for yellow rust ...bp EST-SSR marker ...this marker fragment is closely linked to the Yr1 ...
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Agro morphological and molecular diversity in castor (Ricinus communis L ) germplasm collected from Andaman and Nicobar Islands, India
... that EST-SSRs can be effective and promising molecular markers for identifying diversity in ...The EST-SSR marker system revealed a good amount of genetic variation among the castor ac- ...
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Assessment of EST SSR Markers for Evaluating Genetic Diversity in Watermelon Accessions from Zimbabwe
... variable marker profiles suggesting that considerable polymor- phism exists in the vicinity of coding regions of the wa- termelon genome ...watermelon EST-unigenes was initiated [8]. The markers designed ...
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Analysis of genetic diversity of Leuciscus leuciscus baicalensis using novel microsatellite markers with cross-species transferability.
... three EST- SSRs successfully amplified target fragments in all cross-species: BJZ6, BJZ34, and ...gSSR marker was polymorphic, and the BJZ6 and BJZ62 primer pairs were monomorphic in all three ...the ...
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Characterization and Development of EST-SSR Markers in Sweet Potato (Ipomoea batatas (L.) Lam)
... developed EST-SSR markers ranged from 100 to 499 bp (average length 238 ...these SSR-containing sequences, 619 pairs of high-quality SSR primers were designed using WebSat and ...82 ...
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Hybrid identification and genetic variation of Elymus sibiricus hybrid populations using EST-SSR markers
... DNA marker system for hybrid purity testing because of their co-dominance, reproducibility, robustness, and multi- allelic nature ...to SSR marker, which can be more clearly to present the band ...
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Simple sequence repeat (SSR) markers linked to drought tolerant traits in selected Sudanese rice (Oryza sativa L.) genotypes
... The SSR markers were identified as the system of choice for genetic analysis in rice because of their efficiency, abundance in the rice genome, high level of polymorphism and high but simple reproducible assays ...
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Analysis of simple sequence repeat (SSR) structure and sequence within Epichloe endophyte genomes reveals impacts on gene structure and insights into ancestral hybridization events
... B10 SSR revealed that it was located within the cod- ing region of a putative bZIP transcription ...B10 SSR exclusively within the Clavicipitaceae family lead to insertion of a glutamine rich repeat with a ...
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Transfer of microsatellite markers from other Arecaceae species to Syagrus romanzoffiana (Arecaceae)
... ABSTRACT. The species Syagrus romanzoffiana, a native palm tree of South America, is widely distributed and well adapted to southern Brazil. It is an important economic, cultural, and ecological resource, being the ...
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Development and characterization of novel set of polymorphic SSR markers for Dill (Anethum graveolens L.)
... Distribution and Frequency of Microsatellites The investigation for microsatellites in 14,651 Dill EST and genomic sequences was carried out for the present study. In Anethum graveolens a total of 1556 SSRs were ...
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Characterization of new microsatellite markers based on the transcriptome sequencing of Clematis finetiana
... molecular marker develop- ment, such as microsatellite (SSR) and single nucleotide polymorphism (SNP) ...of SSR markers in Clematis has been ...developed SSR markers based on the tran- ...
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Genetic diversity of Paecilomyces variotii isolates by SSR marker in Kerman province, Iran
... Microsatellite marker has advantages such as the wide distribution throughout the genome, high level of polymorphism, discriminating power and codominant transmission (Li ...This marker has been continually ...
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SSR marker based DNA fingerprinting and diversity studies in mustard (Brassica juncea)
... single SSR primers alone can be used for ascertaining the seed purity or admixture and can be used for ascertaining genetic purity at any stage of the growth ...
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The Detection of Anaphalis spp. Genetic Diversity Based on Molecular Character (using ITS, ETS, and EST-SSR markers)
... Molecular data analysis is divided into data analysis in the form of sequences of sequencing results using ITS and ETS primers, and analysis of EST-SSR results. Data sequences obtained from the ITS and ETS ...
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Extrapolative microRNA precursor based SSR mining from tea EST database in respect to agronomic traits
... In the present study, previously reported miRNA sequences were utilized to find their homolog ones from tea as it is already known that plant mature miRNAs are highly conserved within the plant kingdom, and miRNA genes ...
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Genotyping of Albania olive (Olea europaea) germplasm by SSR molecular marker
... The increasing interest in olive varieties with high productivity and quality is the basis of modern olive growing. The molecular characterization of olive varieties is essential to maximize the genetic diversity in the ...
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Confirmation of Pearl Millet Napiergrass Hybrids Using EST Derived Simple Sequence Repeat (SSR) Markers
... napiergrass-specific EST-SSRs were identi- fied for each PMN line, and four paternal-specific EST-SSRs conserved across all napiergrass accessions were selected to screen the putative PMN ...These ...
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Characterization and development of 56 EST-SSR markers derived from the transcriptome of Odontobutis potamophila.
... by EST-simple sequence repeats (EST-SSRs), which are correlated with the genes of known functions and as a useful tool for studying the genetic structure of a fish species (Gao et ...
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Comparative study of EST-SSR, SSR, RAPD, and ISSR and their transferability analysis in pea, chickpea and mungbean
... of EST-SSR primers generated from pea EST, in three ...analysis EST derived SSRs produced 50-80% amplification in mungbean, chickpea, and pea ...experiment, EST derived SSRs generated ...
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Genetic variation, population structure and linkage disequilibrium in Switchgrass with ISSR, SCoT and EST-SSR markers
... Each marker type has unique advantages and these three marker systems have found extensive application in the evaluation of genetic variation, population structure, and assisted selection for crop ...
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