Further comments on the transcriptome and interactome
Correlation between transcriptome and interactome mapping data from Saccharomyces cerevisiae
... The strategy described here reveals a global correlation between expression profiling and protein-interaction mapping data in yeast. Although one may expect that proteins that form complexes or interact in signal ...
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Autophagy-related gene 12 (ATG12) is a novel determinant of primary resistance to HER2-targeted therapies: Utility of transcriptome analysis of the autophagy interactome to guide breast cancer treatment
... autophagy interactome in the in vivo response of breast cancer tissues to anti-cancer ...a transcriptome analysis using PCR arrays, can provide to predict trastuzumab efficacy warrants further ...
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The HTLV 1 Tax interactome
... 147. Bakheet T, Williams BR, Khabar KS: ARED 3.0: the large and diverse AU-rich transcriptome. Nucleic Acids Res 2006, 34:D111-D114. 148. Twizere JC, Kruys V, Lefebvre L, Vanderplasschen A, Collete D, Debacq C, ...
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GmMYB176 Interactome and Regulation of Isoflavonoid Biosynthesis in Soybean
... where transcriptome analysis of rice plants attacked by rice stem borer Chilo suppressalis showed not all gene expression results of RNAseq were correlated with qPCR (Liu et ...
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Further comments on axioms for geometry
... correspond to the points A and B in Q Q Q Q , then the distances between points satisfy | AB | = | XY | . Frequently one also says that a system of axioms is categorical if it has this sort of uniqueness property. ...
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Plants as river system engineers: further comments
... three river types with significant aquatic plant communities are recognized: lowland, low gradient; lowland, clay-dominated; and chalk and other base-rich rivers (Holmes et al., 1999). Research on the chalk ...
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Further TUCP and False River Barrier Comments
... This chart comparing Delta outflow and False River salinity indicates that the Barrier's impact partitions the Delta into areas where water ways have better water quality and some have [r] ...
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Further comments on research militancy. Footnotes on procedures and (in)decisions
... Research militancy takes shape, at least among us, as a series of operations when in the face of concrete problems (or of anguish that stubbornness turns into productive interrogations): how to establish bonds capable of ...
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REPORT. AND FURTHER THAT all agency and public comments be referred to staff for a further report regarding the disposition of this matter.
... COMMENTS: 1.0 Planning Context: In Ontario, when reviewing applications looking to amend local Official Plans and/or Zoning By-laws, development proposals are expected to conform with and meet the intent of all ...
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A human skeletal muscle interactome centered on proteins involved in muscular dystrophies: LGMD interactome
... An interesting outcome of our study is to provide new PPIs that further support and extend previous findings and pinpoint new pathways of interest that could be affected in LGMD. For example, two novel ...
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The arabidopsis cyclic nucleotide interactome
... Fig. 4 Gene expression profiling of the expression correlated cyclic nucleotide binding protein candidates. Heat map to show that the ten expression correlated CNBP candidates (extracted from Table 3) are co-expressed ...
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Targeting the CALR interactome in myeloproliferative neoplasms
... CALR-mutant interactome and demonstrated that CALR mutations promote the formation of abnormal protein chaperone complexes, which alter their cellular localization and result in increased FLI1, ERP57, and CALR ...
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Investigation of the immunophilin interactome of malarial parasites
... score that takes into account results of the database search and de novo sequencing: as a rule of thumb, proteins with a PEAKS score higher than 95 % can be considered confidently identified, but below this and down to ...
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Dissecting the chromatin interactome of microRNA genes
... Our knowledge of the role of higher-order chromatin structures in transcription of microRNA genes (MIRs) is evolving rapidly. Here we investigate the effect of 3D architecture of chromatin on the tran- scriptional ...
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mRNA interactome capture in mammalian cells
... mandatory. Further reduction of background may be achieved by prolonged washing phases (one to three minutes on a rotating wheel at room ...tails, further rounds of hybridization increase the amount of ...
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The Hepatitis E virus intraviral interactome
... compared to our Y2H results as these reported interactions could not be detected in the Y2H screening. These additional experiments studying full length ORF2 interactions lead us to the following results: an O2-O2 ...
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The interactome: Predicting the protein-protein interactions in cells
... BIND, HPRD and MINT, along with predictions based on interaction networks from yeast, fruit fly, mouse and other species, with the underlying assumption that othologous proteins have similar interaction partners. Such ...
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Serial interactome capture of the human cell nucleus
... RNA interactome capture were reduced in 50 mM DTT at 56 °C for 1 h and alkylated with a final concentration of ...was further separated using six pH fractions (pH levels 11, 8, 6, 5, 4 and 3) of strong ...
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A Comprehensive Drosophila melanogaster Transcription Factor Interactome
... Motif co-occurrence analysis Motif compilation and data processing We obtained 307 DNA binding site motifs ( Table S6 ) as PWMs from FlyFactorSurvey (FFS) via the MEME motif database download ( Zhu et al., 2011 ) or from ...
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Protein interactome of muscle invasive bladder cancer
... for further investigation of urothelial muscle-invasive carcinoma. One enriched pathway that did not show any direct relation to bladder cancer was serotonergic synapse that contained 12 protein molecules ( S3 ...
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