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gut microbiomes

Convergence of human and Old World monkey gut microbiomes demonstrates the importance of human ecology over phylogeny

Convergence of human and Old World monkey gut microbiomes demonstrates the importance of human ecology over phylogeny

... human gut microbiome exhibits unique traits that are not present in other ...the gut microbiomes of apes and cercopithecines, the human gut microbiome was enriched for a subset microbial taxa ...

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Community characteristics of the gut microbiomes of competitive cyclists

Community characteristics of the gut microbiomes of competitive cyclists

... the gut microbiomes of 33 cyclists split into three taxonomic clusters, characterized by either high Prevotella, high Bacteroides or a mix of many genera including Bacteroides, Prevotella, Eubacterium, ...

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Potential Mechanism of Detoxification of Cyanide Compounds by Gut Microbiomes of Bamboo-Eating Pandas

Potential Mechanism of Detoxification of Cyanide Compounds by Gut Microbiomes of Bamboo-Eating Pandas

... ABSTRACT Gut microbes can enhance the ability of hosts to consume secondary plant compounds and, therefore, expand the dietary niche breadth of mammalian ...94 gut metagenomes, including 25 from ...

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Global investigation of composition and interaction networks in gut microbiomes of individuals belonging to diverse geographies and age-groups

Global investigation of composition and interaction networks in gut microbiomes of individuals belonging to diverse geographies and age-groups

... of gut microbial composition of individuals belonging to differ- ent geographies and age-groups, as well as the microbial interaction patterns in these ...of gut microbial com- munities also exhibited ...

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A molecular survey of Australian and North American termite genera indicates that vertical inheritance is the primary force shaping termite gut microbiomes

A molecular survey of Australian and North American termite genera indicates that vertical inheritance is the primary force shaping termite gut microbiomes

... symbiotic gut microbiota as unlike most insects, their gut communities are relatively complex comprising in the order of hundreds of species ...specialized gut microbiota comprising bacteria and ...

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Gut Microbiomes of the Eastern Oyster (Crassostrea virginica) and the Blue Mussel (Mytilus edulis): Temporal Variation and the Influence of Marine Aggregate-Associated Microbial Communities

Gut Microbiomes of the Eastern Oyster (Crassostrea virginica) and the Blue Mussel (Mytilus edulis): Temporal Variation and the Influence of Marine Aggregate-Associated Microbial Communities

... ABSTRACT Gut microbial community structure was evaluated for two species of bi- valve molluscs, the eastern oyster (Crassostrea virginica) and the blue mussel (Mytilus edulis) collected from Long Island Sound, ...

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Comparative Analyses of Vertebrate Gut Microbiomes Reveal Convergence between Birds and Bats

Comparative Analyses of Vertebrate Gut Microbiomes Reveal Convergence between Birds and Bats

... We cannot completely discount the possibility that the similarities we observed between bird and bat gut microbiomes are due at least in part to factors also correlated with flight. For example, birds and ...

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Effects of the Dietary Protein and Carbohydrate Ratio on Gut Microbiomes in Dogs of Different Body Conditions

Effects of the Dietary Protein and Carbohydrate Ratio on Gut Microbiomes in Dogs of Different Body Conditions

... (27). In this study, we observed that evenness but not richness increased in response to diet manipulation; that is, the abundances of taxa present became more equal rather than community members that may have been ...

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Direct PCR Offers a Fast and Reliable Alternative to Conventional DNA Isolation Methods for Gut Microbiomes

Direct PCR Offers a Fast and Reliable Alternative to Conventional DNA Isolation Methods for Gut Microbiomes

... human gut contains trillions of bacteria (2) that, together with other microorgan- isms, have large effects on human health and disease ...the gut microbiome on hosts have been brought to the forefront by ...

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Metaproteomics reveals persistent and phylum-redundant metabolic functional stability in adult human gut microbiomes of Crohn’s remission patients despite temporal variations in microbial taxa, genomes, and proteomes

Metaproteomics reveals persistent and phylum-redundant metabolic functional stability in adult human gut microbiomes of Crohn’s remission patients despite temporal variations in microbial taxa, genomes, and proteomes

... the gut micro- biome metabolism is not driven by a set of discrete linear pathways but a web of interconnected reactions facilitated by a network of enzymes that connect multiple molecules across multiple ...

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Clostridium difficile Colonizes Alternative Nutrient Niches during Infection across Distinct Murine Gut Microbiomes

Clostridium difficile Colonizes Alternative Nutrient Niches during Infection across Distinct Murine Gut Microbiomes

... increased fitness for exploiting differentially perturbed gut communities. ExGF mice provided a partially controlled system of resource competition. Under this condition, Neu5Ac was found to be the highest-scoring ...

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Skin and gut microbiomes of a wild mammal respond to different environmental cues

Skin and gut microbiomes of a wild mammal respond to different environmental cues

... SK microbiomes are derived principally from the environment [13, 15, 28, 71, 77, 78] and pro- cesses that negatively affect biodiversity, are expected to have a concomitant effect on SK microbiota [6, ...

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Culture-enriched human gut microbiomes reveal core and accessory resistance genes

Culture-enriched human gut microbiomes reveal core and accessory resistance genes

... Nonetheless, the 1,581,710 putative genes stringently annotated as metabolic enzymes constitute only 7.3% of total genes detected in CIM and CEM. We thus gener- ated clusters of orthologous genes (COG) using all ...

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Protective role of the vulture facial skin and gut microbiomes aid adaptation to scavenging

Protective role of the vulture facial skin and gut microbiomes aid adaptation to scavenging

... the gut samples, carcasses were opened to expose the entire gastrointestinal ...called gut) located 2–3 cm above the cloaca was isolated with a pair of medical ...

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Similarity of the dog and human gut microbiomes in gene content and response to diet

Similarity of the dog and human gut microbiomes in gene content and response to diet

... dog gut gene pool overlaps most with the human microbiome (309,232 out of 1,247,405, circa 26%) and the murine one least (122,131 out of 2,487,431; ...animal microbiomes at much lower rates, namely ...

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Variable responses of human and non-human primate gut microbiomes to a Western diet

Variable responses of human and non-human primate gut microbiomes to a Western diet

... exposure to local microbial pools, and antibiotic use. Like- wise, future studies must control for the potential effects of non-human primate captivity such as host social contact networks and early life influences on ...

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The human microbiome in evolution

The human microbiome in evolution

... host gut communities con- trary to the general pattern of convergence by ...host gut microbiomes comparatively similar to their carnivorous and omnivorous confamilials [35] and that differ sub- ...

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Antibiotic Resistance Gene Diversity and Virulence Gene Diversity Are Correlated in Human Gut and Environmental Microbiomes

Antibiotic Resistance Gene Diversity and Virulence Gene Diversity Are Correlated in Human Gut and Environmental Microbiomes

... human gut metagenomes from different individuals and from distinct human populations across the ...human gut, there are less ARd and VFd than in more diversified environments, and yet correlations between ...

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High-Fat Diet Changes Fungal Microbiomes and Interkingdom Relationships in the Murine Gut

High-Fat Diet Changes Fungal Microbiomes and Interkingdom Relationships in the Murine Gut

... Fungal taxa correlate with bacterial KEGG modules. Inference of fungal micro- biome function from sequence data is not technically possible due to the paucity of fungal sequences in current databases, complexities of ...

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Clostridium difficile Alters the Structure and Metabolism of Distinct Cecal Microbiomes during Initial Infection To Promote Sustained Colonization

Clostridium difficile Alters the Structure and Metabolism of Distinct Cecal Microbiomes during Initial Infection To Promote Sustained Colonization

... the gut microbiota, which is also involved in clearing the infection as the community recovers from ...tive gut microbiomes that each allowed for ...the gut environment to promote ...

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