• No results found

Local Alignment

A New Approach to Sequence Local Alignment: Normalization with Concave Functions

A New Approach to Sequence Local Alignment: Normalization with Concave Functions

... optimal local alignment, and the normalized similarity score can be transferred to distance, then we used the neighbor-joining method, which is one of the most e ffi cient methods to build a phylogenetic ...

84

A Local Alignment Kernel in the Context of NLP

A Local Alignment Kernel in the Context of NLP

... Relation extraction is one of the tasks in the natural language processing which is constantly revisited. To date, there are many methods which have been proposed to tackle it. Such ap- proaches often benefit from using ...

8

New finite size correction for local alignment score distributions

New finite size correction for local alignment score distributions

... optimal local alignment cannot start anywhere along the full length m (n) of se- quence I (J), because there might be insufficient se- quence to permit it to achieve the score y (Figure ...the ...

6

A Comparative Study on Global and Local Alignment Algorithm Methods

A Comparative Study on Global and Local Alignment Algorithm Methods

... used local alignment algorithm that allows gaps is described by Smith and Waterman ...global alignment methods are modified and a new algorithms have been developed to locate common subsequence ...

10

A Study of Convolution Tree Kernel with Local Alignment

A Study of Convolution Tree Kernel with Local Alignment

... In this paper, we propose a tree kernel calcula- tion by allowing local alignments. More flex- ible productions are considered in line with modifiers in real sentences. Considering text related applications, words ...

8

Local structural alignment of RNA with affine gap model

Local structural alignment of RNA with affine gap model

... handle local structural alignment with affine gap model of RNA with regular structure that compute the optimal ...or local alignment without gap ...computing local structural ...

9

Evaluating global and local sequence alignment methods for comparing patient medical records

Evaluating global and local sequence alignment methods for comparing patient medical records

... sequence alignment methods, dynamic time warping (DTW) and Needleman-Wunsch algorithm (NWA), and their corresponding versions for local align- ments, modified DTW for Local alignment (DTWL) ...

13

Optimal Constituent Alignment with Edge Covers for Semantic Projection

Optimal Constituent Alignment with Edge Covers for Semantic Projection

... are local, i.e., they optimise the alignment for each node independently of all other ...Moreover, local alignment methods constitute a rather weak model of semantic equivalence since they ...

8

Computational Molecular Coevolution

Computational Molecular Coevolution

... sequence alignment is to create a protein family consisting of orthologous ...through local alignment is to distinguish orthologues from ...family alignment, it is important to include only ...

200

Robust and Efficient Algorithms for Protein 3-D Structure Alignment and Genome Sequence Comparison

Robust and Efficient Algorithms for Protein 3-D Structure Alignment and Genome Sequence Comparison

... global alignment is output, we are able to know approxi- mately where the aligned positions ...global alignment segment. A global alignment segment looks exactly like a local alignment, ...

127

Local DNA sequence alignment in a cluster of workstations: Algorithms and tools

Local DNA sequence alignment in a cluster of workstations: Algorithms and tools

... In this paper, we proposed and evaluated one parallel and distributed approach to solve the DNA local and global sequence alignment problem. A DSM system was chosen since, for this kind of problem, DSM ...

8

CABRA: Cluster and Annotate Blast Results Algorithm

CABRA: Cluster and Annotate Blast Results Algorithm

... The most extended way to functionally annotate a sequence is using basic local alignment search tool (BLAST) searches [1] and the orthology information drawn from them. These are usually carried out in web ...

6

Coordinate Structure Analysis with Global Structural Constraints and Alignment Based Local Features

Coordinate Structure Analysis with Global Structural Constraints and Alignment Based Local Features

... whether alignment-based fea- tures like ours can be built into their reranker, or more generally, whether the coordination scopes output by our method help improving parsing ac- ...

9

Catholicism decentralized : local religion in the early modern periphery

Catholicism decentralized : local religion in the early modern periphery

... of local government structures, ecclesiastical organization and lay-clerical relations revealed a gradual alignment to Tridentine norms on the administration of sacraments from the late sixteenth / early ...

34

Comparative analysis of the quality of a global algorithm and a local algorithm for alignment of two sequences

Comparative analysis of the quality of a global algorithm and a local algorithm for alignment of two sequences

... global alignment region in a set of subopti- mal alignments and its similarity with the structural alignment ...optimal alignment, recurring most frequently in suboptimal alignments, were very ...

12

Classification with Random ForestBased onLocal Tangent Space Alignment and Neighborhood Preserving Embedding for MSER features: MSER_DFT_LTSA-NPE_RF

Classification with Random ForestBased onLocal Tangent Space Alignment and Neighborhood Preserving Embedding for MSER features: MSER_DFT_LTSA-NPE_RF

... Abstract — In this article, 180 gastric images taken with Light Microscope help are used. Maximally Stable Extremal Regions (MSER) features of the images for classification has been calculated. These MSER features have ...

7

Development of a computational framework for protein homology detection by incorporating realignment

Development of a computational framework for protein homology detection by incorporating realignment

... progressive alignment strategy, sequences are aligned in a predetermined order as dictated by the guide tree in groups with other similar sequences together with subsequent addition of more dissimilar ...

44

Gauss Newton Deformable Part Models for face alignment in the wild

Gauss Newton Deformable Part Models for face alignment in the wild

... We introduced a DPM fitting strategy which jointly opti- mizes a global shape model and a part-based, trained in- the-wild, flexible appearance model, and thus by-passes some of the limitations of most current DPM ...

8

A survey on computer vision techniques for detecting facial features towards the early diagnosis of mild cognitive impairment in the elderly

A survey on computer vision techniques for detecting facial features towards the early diagnosis of mild cognitive impairment in the elderly

... In the UK, more and more people are suffering from various kinds of cognitive impairment. Its early detection and diagnosis can be of great importance. However, it is challenging to detect cog- nitive impairment in the ...

12

Comparative Analysis of Structure and Sequences of  Oryza sativa Superoxide Dismutase

Comparative Analysis of Structure and Sequences of Oryza sativa Superoxide Dismutase

... http://www.expasy.org/swissmod/swiss-model.html. SWISS-MODEL is a server for automated comparative modeling of the three dimensional (3D) structures. SWISS-MODEL provides several levels of user interact- tion through ...

11

Show all 10000 documents...

Related subjects