microbial genome
The Harvest suite for rapid core genome alignment and visualization of thousands of intraspecific microbial genomes
... aligns microbial genomes to identify both structural and point variations, but like read mapping, Parsnp scales to thousands of closely related ...multiple genome align- ment tools ...core- genome ...
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Millstone: software for multiplex microbial genome analysis and engineering
... ing microbial genomes now allow for increasingly com- plex functional genomics studies and bioengineering ...the genome come into focus, the promise of designing new organisms to address medical and ...
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Genomes of the T4 related bacteriophages as windows on microbial genome evolution
... other microbial genomes in ...T4 genome, the T4 relatives reviewed here are predicted to share a genetic core, or “Core Genome” that determines the structural design of their dsDNA chromosomes, their ...
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Mining microbial genomes for new natural products and biosynthetic pathways
... of microbial natural products as a cornerstone of new drug discovery in the 20th century (Fleming, 1929; Chain et ...many microbial natural products had found their way into the clinic as antibacterial, ...
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Annotation consistency tool: the assessment of JCVI microbial genome annotations
... Executed via the command-line version or using the Web-based interface, the first iteration of ACT takes, on average, approximately one minute to process a single prokaryotic genome. A linear scale-up in runtime ...
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Complete genome sequence of Saccharomonospora viridis type strain (P101T)
... the genome annotation pipeline in the Inte- grated Microbial Genomes Expert Review (IMG-ER) system [ 27 ], followed by a round of manual cura- tion using the JGI GenePRIMP pipeline ...the genome for ...
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High-quality permanent draft genome sequence of the extremely osmotolerant diphenol degrading bacterium Halotalea alkalilenta AW-7T, and emended description of the genus Halotalea
... permanent-draft genome sequence and annotation of Halotalea alkalilenta AW-7 T are ...thousand microbial genomes (KMG) project at the DOE Joint Genome Institute, and it is the only strain within the ...
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Draft genome sequences and description of Lactobacillus rhamnosus strains L31, L34, and L35
... Laboratory genome annotation pipeline, fol- lowed by a round of manual curation using the JGI GenePRIMP pipeline ...Integrated Microbial Genomes Expert Review (IMG-ER) platform ...
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Complete genome sequence of Arthrobacter sp. strain FB24
... clusters of orthologous groups) in the genomes of these strains were made and visualized using hi- erarchical clustering (Figure 5) with tools availa- ble on the Joint Genome Institute (JGI) Integrated ...
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High quality draft genome sequence of Brachymonas chironomi AIMA4T (DSM 19884T) isolated from a Chironomus sp. egg mass
... complete genome sequence and ...chironomi genome is part of the Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes (KMG) ...
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Draft genome sequence of Rubidibacter lacunae strain KORDI 51-2T, a cyanobacterium isolated from seawater of Chuuk lagoon
... The gene prediction and functional annotation of the genome sequence was basically performed within the Integrated Microbial Genomes – Expert Review (IMG-ER) platform [11]. The tRNAScan-SE was used to find ...
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Complete genome sequence of Sanguibacter keddieii type strain (ST-74T)
... (http://geneprimp.jgi-psf.org) [ 24 ]. The predicted coding sequences (CDS)s were translated and used to search the National Center for Biotechnol- ogy Information (NCBI) nonredundant database, UniProt, TIGRFam, Pfam, ...
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High quality draft genome sequence of Leucobacter chironomi strain MM2LBT (DSM 19883T) isolated from a Chironomus sp. egg mass
... complete genome sequence and annota- ...chironomi genome is part of the Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes (KMG) ...
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High quality draft genome sequence of Bacteroides barnesiae type strain BL2T (DSM 18169T) from chicken caecum
... thousand microbial genomes project [9] which aims not only to increase the sequencing coverage of key reference microbial ge- nomes [15], but also to generate a large genomic basis for the discovery of ...
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Draft genome sequence of Halomonas lutea strain YIM 91125T (DSM 23508T) isolated from the alkaline Lake Ebinur in Northwest China
... The genome of strain YIM 91125 T becomes the twelfth species sequenced in Halomonas, and the thirteenth species sequenced in ...draft genome sequence and annotation of its type ...long genome of ...
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Complete genome sequence of Halogeometricum borinquense type strain (PR3T)
... complete genome sequence, and annotation. This is the first complete genome sequence of the halobacterial genus Halogeometricum, and this 3,944,467 bp long six replicon genome with its 3937 pro- ...
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Rapid scoring of genes in microbial pan genome wide association studies with Scoary
... accurate genome data, the majority of which is poorly understood. Genome-wide as- sociation studies (GWAS) have in human medicine and genomics become a workhorse for linking genetic variants in a population ...
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Microbial activity response to hydrogen injection in thermophilic anaerobic digesters revealed by genome-centric metatranscriptomics
... the microbial community under consideration was well captured (Additional file 1: Table ...of microbial composition; results from beta diver- sity demonstrated that the microbial community was stable ...
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Tracking microbial colonization in fecal microbiota transplantation experiments via genome-resolved metagenomics
... Recent advances in high-throughput sequencing technologies, molecular approaches, and computation have dramatically increased our ability to investigate the ecology of microbial populations. Utilization of these ...
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Are Microbes Thermodynamically Optimised Self-Reproducing Machines?
... Figure 2. Anabolic properties of genome-scale models of the BIGG database. The y-axis indicates the minimum required amount of ATP per biomass carbon. The x-axis displays the ratio of carbon dioxide released by ...
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