molecular strain typing
Recent household transmission of tuberculosis in England, 2010–2012: retrospective national cohort study combining epidemiological and molecular strain typing data
... was lowest for those aged 1–14 years (OR, 0.26; 95% CI, 0.19–0.35) compared to the reference group of 25–44 year olds (data not shown). Those born in the UK with a Black African (aOR, 2.26; CI, 1.15–4.44), Indian (aOR, ...
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Tracking Trichophyton tonsurans Through a Large Urban Child Care Center: Defining Infection Prevalence and Transmission Patterns by Molecular Strain Typing
... tion of whether comparable centers across the United States, caring for high-risk populations, exhibit similar statistics. Affirmation across a spectrum of young chil- dren would portend a fungal population with ...
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Culture Confirmed Reinfection of a Person with Different Strains of Borrelia burgdorferi Sensu Stricto
... In recent years, the utility of serum-based diagnostic testing for Lyme disease has improved substantially; however, recovery by culture of the bacterium from skin biopsies of suspected patients is still the only ...
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Characterization of IS1245 for Strain Typing of Mycobacterium avium
... IS1245 typing resolved only four patterns and thus provided poor discriminatory ...same strain had indistinguishable IS1245 ...IS1245 typing those isolates would have been designated distinct ...for ...
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Application of Whole Genome Sequencing for Bacterial Strain Typing in Molecular Epidemiology
... for molecular strain ...clonality. Strain relatedness data determined by PFGE and WGS roughly correlated, but the resolu- tion of WGS was superior (P ⴝ ...for molecular epidemiological ...
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Tuberculosis Control and Role of Molecular Epidemiology Studies in Iran: A Systematic Review
... Beijing strain,(4) a strain with higher virulence, played a role ...Beijing strain were reported, and eight were from Afghan ...Beijing strain is uncommon, the prevalence of HIV is low, (61) ...
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Review on Molecular Typing Methods of Pathogens
... PCR typing methods using primers designed on the basis of the following specific sequences: conserved ribosomal gene spacer sequence (RS), repetitive extragenic palindromic sequence (REP), and enterobacterial ...
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Internal Transcribed Spacer Region Sequence Heterogeneity in Rhizopus microsporus: Implications for Molecular Diagnosis in Clinical Microbiology Laboratories
... each strain were sequenced twice with an ABI Prism 3700 DNA Analyzer (Applied Biosystems, Foster City, CA) and using the PCR primers ITS1 and ...each strain were se- quenced twice, using primers ITS1 and ...
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Open Babel: An open chemical toolbox
... by molecular dynamics and docking packages (AutoDock, Amber), formats used by 2D drawing packages (Chem- Draw), 3D viewers (Chem3D, Molden) and chemical kinetics and thermodynamics (ChemKin, ...the ...
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Typing of Helicobacter pylori with monoclonal antibodies against Lewis antigens in lipopolysaccharide
... Helicobacter pylori has been implicated in the etiology of human gastritis and in the development and recurrence of gastric and duodenal ulcers (5, 7). More recently, infection by H. pylori is thought to be causatively ...
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Development of a multilocus sequence typing scheme for the molecular typing of Mycoplasma pneumoniae
... Description of Mycoplasma pneumoniae strains used in this study, their sequence type ST and allelic profile, and their MLVA and P1 types.. Strains isolated from the same patient are indi[r] ...
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Genetic Diversity of Neisseria gonorrhoeae Housekeeping Genes
... establish strain-specific correlates of microbial pathogenesis, for epidemiological purposes to investigate the endemic and epidemic spread of organisms, and for genetic purposes to better understand bacterial ...
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Estimating Recombinational Parameters in Streptococcus pneumoniae From Multilocus Sequence Typing Data
... sequence typing (MLST) is a highly discriminatory molecular typing method that defines isolates of bacterial pathogens using the sequences of ⵑ450-bp internal fragments of seven housekeeping ...the ...
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Development of a Multilocus Sequence Typing Scheme for Molecular Typing of Mycoplasma pneumoniae
... this typing method and its usefulness in epidemic analysis should be confirmed by comparing outbreak-related strains to a set of control strains that were isolated from a similar time period and geographical area ...
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SmaI Restriction Site Based Multiplex PCR for Typing of Hospital and Community Acquired Staphylococcus aureus
... of molecular techniques are currently used to type MRSA strains, including PFGE, MLST, and spa and SCCmec ...spa typing are relatively time-consuming and require specialist equipment and exper- tise, their ...
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Serotype epidemiology and multidrug resistance patterns of Salmonella enterica infecting humans in Italy
... Many antibiotic resistance plasmids can promote hori- zontal dissemination of genetic traits among bacteria of different genera through the conjugation process [11]. For this reason, transferability of the resistance ...
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Molecular typing of Trichomonas vaginalis isolates by actin gene sequence analysis and carriage of T vaginalis viruses
... Our study was limited by the small number of isolates, which rendered it difficult to investigate the implication of TVV carriage on clinical signs and symptoms. Despite the low number of T. vaginalis isolates, the ...
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Core Genome Multilocus Sequence Typing: a Standardized Approach for Molecular Typing of Mycoplasma gallisepticum
... This M. gallisepticum WGS collection included all WGS data of M. gallisepticum available at GenBank (21 genomes) as of July 2017 (https://www.ncbi.nlm.nih.gov/genome/?term ⫽ NC_017502). This GenBank collection included 7 ...
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Longitudinal Study of the Molecular Epidemiology of Methicillin Resistant Staphylococcus aureus at a University Hospital
... (PFGE) typing of MRSA isolates revealed that many isolates belonged to one ...the molecular epidemiology of MRSA, to assess the frequencies of the strains detected as a reference for fur- ther ...
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Conventional and molecular investigation of Shigella isolates in relation to an outbreak in the area of Isfahan, Iran.
... Background and Objective: Over 165 million cases of shigellosis occur in the world each year, mostly in developing countries. Outbreaks of shigellosis are associated with poor sanitation, natural calamities, contaminated ...
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