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predicted target

Correlation of microRNA levels during hypoxia with predicted target mRNAs through genome-wide microarray analysis

Correlation of microRNA levels during hypoxia with predicted target mRNAs through genome-wide microarray analysis

... against predicted targets with differentially expressed miRNAs was analyzed using computational techniques we developed specifically for this ...algorithm-predicted target mRNAs. However, the groups ...

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Chemokine receptor CCR6 expression is regulated by miR 518a 5p in colorectal cancer cells

Chemokine receptor CCR6 expression is regulated by miR 518a 5p in colorectal cancer cells

... feasible. Consequently, there may be imperfect comple- mentarity interactions based on our alignment studies, but the seed sequence calculated by the software tools may be the only one that sterically fits the 3D model ...

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miRNA-dysregulation associated with tenderness variation induced by acute stress in Angus cattle

miRNA-dysregulation associated with tenderness variation induced by acute stress in Angus cattle

... of predicted target genes further showed that miRNA may be involved in important Table 3 Networks and functions that target genes are related ...

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MicroRNAs in Nonalcoholic Fatty Liver Disease

MicroRNAs in Nonalcoholic Fatty Liver Disease

... on predicted target genes have associated hepatic miRNAs with molecular pathways involved in NAFLD progression such as cholesterol and lipid metabolism, insulin signaling, oxidative stress, inflammation, ...

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Original Article Significant target genes and signaling for miR-34a in gastrointestinal stromal tumors: a study of GEO-data mining and bioinformatics approaches

Original Article Significant target genes and signaling for miR-34a in gastrointestinal stromal tumors: a study of GEO-data mining and bioinformatics approaches

... miR-34a target genes was performed for this ...were predicted by prediction tools among the frequently used miRNA databases, namely miRDB, MirTarBase, miRanda, PITA, PicTar, PolymiRTS, RNA22, Tar- getScan, ...

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RNA sequencing reveals the expression profiles of circRNA and indicates that circDDX17 acts as a tumor suppressor in colorectal cancer

RNA sequencing reveals the expression profiles of circRNA and indicates that circDDX17 acts as a tumor suppressor in colorectal cancer

... miRNA target genes (using TarBase ...silico predicted miRNA target genes (using microT-CDS ...and target miRNAs with experi- mentally supported or in silico predicted target ...

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miR-34a as hub of T cell regulation networks

miR-34a as hub of T cell regulation networks

... of target genes of miR-34a using miR- Walk ...potential target genes of ...were predicted by at least 4 dif- ferent target prediction algorithms, we reduced the num- ber of target genes ...

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Ontogenetic expression of metabolic genes and microRNAs in rainbow trout alevins during the transition from the endogenous to the exogenous feeding period

Ontogenetic expression of metabolic genes and microRNAs in rainbow trout alevins during the transition from the endogenous to the exogenous feeding period

... or the potential role of miRNA in the acquisition of the capacity to utilize external feeds. Specifically, we assessed potential changes in global intermediary metabolism between nutritional phenotypes by investigating ...

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Identifying transcription factors and microRNAs as key regulators of pathways using Bayesian inference on known pathway structures

Identifying transcription factors and microRNAs as key regulators of pathways using Bayesian inference on known pathway structures

... network was based on three nodes from the MAPK sig- naling pathway. These three nodes were subjected to all the steps in our methodology: pathway pre-processing, prediction of target TFs and microRNAs, RF ...

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Circular RNAs are abundantly expressed and upregulated during repair of the damaged endometrium by Wharton’s jelly-derived mesenchymal stem cells

Circular RNAs are abundantly expressed and upregulated during repair of the damaged endometrium by Wharton’s jelly-derived mesenchymal stem cells

... Results: WJ-MSCs exerted a reparative effect upon damaged ESCs in the cocultured group such as improved cell morphology, higher proliferative ability, and lower apoptosis rate. CircRNA array showed that 7757 circRNAs ...

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Mutation Rate and Predicted Phenotypic Target Sizes in Ethylnitrosourea-Treated Mice

Mutation Rate and Predicted Phenotypic Target Sizes in Ethylnitrosourea-Treated Mice

... to neuronal signaling or gene regulation. Flanking primers Efficient recovery of induced mutations: ENU is a were designed using Primer 3 from the Massachusetts Institute high-efficiency mutagen in the mouse germline ...

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Modeling Complement Types in Phrase Based SMT

Modeling Complement Types in Phrase Based SMT

... datasets are from the WMT2015 shared task. To predict the four morphological features num- ber, gender, case and strong/weak for inflecting the stemmed output, we trained 4 CRF sequence mod- els on the target-side ...

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Influence of pupil dilation on predicted postoperative refraction and recommended IOL to obtain target postoperative refraction calculated by using third- and fourth-generation calculation formulas

Influence of pupil dilation on predicted postoperative refraction and recommended IOL to obtain target postoperative refraction calculated by using third- and fourth-generation calculation formulas

... Sympathetic nerve stimulation causes relaxation and con- traction of the ciliary and dilator muscles, respectively. When the ciliary muscle is relaxed, the suspensory ligaments are taut, which cause the lens to be ...

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L2 poverty of the stimulus at the syntax-semantics interface: Quantifier scope in non-native Japanese

L2 poverty of the stimulus at the syntax-semantics interface: Quantifier scope in non-native Japanese

... accepted non-target-like object-wide scope in Japanese while intermediate-level Korean- and Chinese-speaking learners did not. This provided clear evidence of L2 developmental paths differing according to the L1. ...

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Muon-induced neutron production and detection with GEANT4 and FLUKA

Muon-induced neutron production and detection with GEANT4 and FLUKA

... Although the nuclear recoil spectrum is generally harder in FLUKA than in GEANT4, the number of events at 2–10 keV does not differ much in the two models. The difference between these spectra is mainly explained by the ...

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Does visual working memory represent the predicted locations of future target objects? An event related brain potential study

Does visual working memory represent the predicted locations of future target objects? An event related brain potential study

... the predicted location of test stimuli in the same versus the opposite hemifield, these preparatory shifts should be reflected by the CDA component that emerges during memory ...

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Ten years of health workforce planning in the Netherlands: a tentative evaluation of GP planning as an example

Ten years of health workforce planning in the Netherlands: a tentative evaluation of GP planning as an example

... the target year (year T + X), the projection or target year in the ...the target year. Be- tween the baseline year and the target year, in the cen- tral part of the figure, the expected ...

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Next-generation sequencing identifies articular cartilage and subchondral bone miRNAs after ESWT on early osteoarthritis knee

Next-generation sequencing identifies articular cartilage and subchondral bone miRNAs after ESWT on early osteoarthritis knee

... 118 target genes identified for miRNAs of interest in articular cartilage and 214 target genes in subchondral bone by next generation sequencing ...that predicted targets were involved in cartilage ...

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Predicted philogeny, secondary conformational structure, and epitope antigenicity of immunological sequences in poultry.

Predicted philogeny, secondary conformational structure, and epitope antigenicity of immunological sequences in poultry.

... best predicted protein following the central dogma of molecular biology (RNA-Protein) (Jaeger et ...be predicted for 10; the remaining five sequences had more than 2,500 nucleotides and could not be ...

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Effect of sex and polymorphisms of CYP2B6 and UGT1A9 on the difference between the target-controlled infusion predicted and measured plasma propofol concentration

Effect of sex and polymorphisms of CYP2B6 and UGT1A9 on the difference between the target-controlled infusion predicted and measured plasma propofol concentration

... the target concentration of propofol was determined by the anesthesiologist in charge according to the patients ’ con- dition because this was an observational ...

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