protein interaction extraction system
Protein Protein Interaction Extraction Based on Convex Combination Kernel Function
... PPI extraction, which was made by different single different kernel functions, and only using single kernel function hardly trained the optimal classified model to extract ...
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Dependency directed Tree Kernel based Protein Protein Interaction Extraction from Biomedical Literature
... Evaluation is done using 10-fold document- level cross-validation, each of which contains 90% of documents as the training data and 10% as the test data. Particularly, for the AIMed cor- pus we apply the exactly same ...
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A Rich Feature Vector for Protein Protein Interaction Extraction from Multiple Corpora
... We propose a feature vector with three types of features, corresponding to the three different ker- nels, which were each combined with the two parsers: the Enju 2.3.0, and KSDEP beta 1 (Miyao et al., 2008); this feature ...
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A Study on Dependency Tree Kernels for Automatic Extraction of Protein Protein Interaction
... Their system is the current state-of-the-art for PPI extraction on several bench- ...pair extraction, there has been some approaches that exploited de- pendency parse analyses along with kernel ...
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Easy and fast method for expression and native extraction of Plasmodium vivax Duffy binding protein fragments
... parasite protein interactions with their target cells (reticulocytes) has been studied with molecules obtained from eukaryote ...coli system lies in the difficulty in obtaining functional ...regarding ...
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Learning Protein–Protein Interaction Extraction using Distant Supervision
... PPI extraction is usually tackled by classifying the n 2 undirected protein mention pairs within a sentence, where n is the number of protein men- tions in the ...
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Pathway annotation and analysis with Reactome: The solute carrier class of membrane transporters
... major protein and nucleotide sequence databases, as well as to the Gene Ontology and PubMed ...overlay interaction or expression data, further enriching the pathway ...
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Characterization of Protein Interfaces to Infer Protein-Protein Interaction
... with protein interactions offer great promise to help understand and delineate these ...the protein molecules as well as the protein-protein ...of Protein Data Bank, and further limited ...
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Modularity detection in protein protein interaction networks
... Background: Many recent studies have investigated modularity in biological networks, and its role in functional and structural characterization of constituent biomolecules. A technique that has shown considerable promise ...
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A New Algorithm for Protein-Protein Interaction Prediction
... transient protein complexes ([5]). This process is called protein-protein interaction ...the system-level understanding of molecular processes ...
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Identification and characterisation of the interaction between Wiskott-Aldrich syndrome protein (WASP) and c-Src kinases
... a protein tyrosine kinase (Hunter and Sefton, ...first protein tyrosine kinase discovered, has provided a paradigm for the understanding of PTKs and since its discovery other homologous proteins have been ...
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Generation and Comprehensive Analysis of an Influenza Virus Polymerase Cellular Interaction Network
... cytometry protein interaction (FCPI) assay was set up using two couples of interacting proteins (see ...of protein extracts was suspended in 200 l lysis buffer (150 mM NaCl, 20 mM Tris-HCl [pH 8], 1 ...
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Optimization of Ultrasonic-Assisted Extraction of Total Phenolics from Citrus aurantium L. Blossoms and Evaluation of Free Radical Scavenging, Anti- HMG-CoA Reductase Activities
... Ultrasonic-assisted extraction of total phenolics from CAB was carried out with an ultrasonic apparatus (KQ-5200DE, Kunshan ultrasonic ...which extraction solvent was replenished to bring the final volume ...
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Construction and analysis of protein-protein interaction network associated with human sperm-egg interaction
... Male factor problems, mainly defined by abnormal semen analysis, are the single most conventionally diagnosed reason of infertility. In vitro fertilization (IVF) is implemented for men with no sperm dysfunction. ...
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Extraction of biological interaction networks from scientific literature
... extract protein–protein interactions 24 in Drosophila the texts were divided into fragments (ie sentences or part of ...of protein names and an interaction verb (all taken from predefined ...
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Comparison of Hubs in Effective Normal and Tumor Protein Interaction Networks
... Advances in gene chip technologies have led to quan- tizing and monitoring the expressions of various genes (Gerhold et al,. 1999). Gene expression profiling is an important tool for diagnosis and classification of ...
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A REVIEW BIOANALYTICAL METHOD DEVELOPMENT AND ITS VALIDATION BY RP HPLC
... various extraction techniques like liquid-liquid extraction, solid phase extraction and protein precipitation which play important role in sample preparation and detection by RP HPLC and ...
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Algorithmic approaches to protein-protein interaction site prediction
... These vectors were then used for ML via a feed-forward artificial neural network (ANN) with a sigmoid trans- fer function [247,248] and the resilient back-propagation algorithm [249]. Separate ANN classifiers for each ...
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Membrane Protein Profiling of Human Islets of Langerhans Using Several Extraction Methods
... Surface Protein Biotinylation Human islets (127 mg, corresponding to 55,000 IEQ) were treated with the Cell Surface Protein Isolation Kit (Pierce, Rockford, IL, USA) according to instructions from the ...
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Optimizing the Impact of Subcritical Water Mediated Extraction on Lipid composition of Activated Sludge for Bioenergy and Oleochemical Production
... the interaction of temperature, biomass loading and extraction time during the subcritical water extraction of lipid from activated sludge influenced positively the lipid ...
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