remote protein homology detection
Two-layer SVM classifier for remote protein homology detection and fold recognition
... as remote homology detection still remains a challenging problem to ...biologists. Remote protein homology detection refers to detection of structural ...
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Development of a computational framework for protein homology detection by incorporating realignment
... levels: class, fold, super family and family. The scope of our work will be at super- family level, in which families are grouped such that a common evolutionary origin is not obvious from sequence identity, but in the ...
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Sequence comparison latent semantic analysis and support vector machine to detect remote protein homology
... of protein sequence can be easier and more efficient. Remote protein homology detection is one of the methods used widely by researchers to manage protein sequences by ...
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Online Full Text
... in protein structure classifier and other ...in protein remote homology detection and represent the highest level of development for ...each protein sequence will be replaced by ...
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Multi-class Protein Classification Using Adaptive Codes
... for protein sequences, that is, string kernels, some of which give state-of-the-art performance for the binary prediction task of discriminating between one class and all the ...underlying protein ...
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Using Chou’s Pseudo Amino Acid Composition for Protein Remote Homology Detection
... Protein remote homology detection is a key problem in ...general protein representation method that is able to convert proteins with different lengths into fixed length vectors and ...
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Protein Remote Homology Detection and Fold Recognition based on Features Extracted from Frequency Profiles
... A recently established fold benchmark [15] is used for protein fold recognition. The benchmark contains 3840 proteins from 374 superfamilies and 86 superfamilies are tested. These proteins extracted from SCOP ...
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Protein 3D structure determination using homology modeling and structure analysis
... The protein sequence of aspartate aminotransferase of pig was retrieved from the Swiss-Prot data- ...for homology modeling was determined using ...by homology modeling softwares such as Swiss Model ...
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Identification and zinc dependence of the bovine herpesvirus 1 transactivator protein BICP0.
... The predicted protein, designated BHV-1 infected cell protein 0 BICPO, contains a zinc finger domain with homology to ICPO of herpes simplex virus type 1 and protein 61 of varicella-zost[r] ...
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Stringent homology-based prediction of H. sapiens-M. tuberculosis H37Rv protein-protein interactions
... stringent homology-based approach lies in the fact that there is a limited amount of source eukaryote-prokaryote PPIs available ...stringent homology-based ...
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Structural, Functional Insights of Alsin Protein Using Homology Modeling and Docking Studies
... a protein called ...This protein is particularly abundant in motor neurons, the specialized nerve cells in the brain and spinal cord that control the movement of muscles ALS is a motor neuron disease that ...
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Antagonistic Effects of Cellular Poly(C) Binding Proteins on Vesicular Stomatitis Virus Gene Expression
... 2 protein ZNF9 in regulating ornithine decarboxylase expression (30) and as- sociates with the nucleo-cytoplasmic SR protein (SRp20) to modulate poliovirus genome translation (5), whereas PCBP1 acts ...
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BIOCHEMICAL ANALYSIS AND HOMOLOGY MODELING OF COLLAGENASE PROTEIN OF SCYLLA SERRATA CRAB
... terms are highly ambiguous, as well as black crab) is an economically important species of crab found in the estuaries and mangroves of Africa, Australia and Asia. In their most common form, the shell colour varies from ...
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Homology Modeling and Molecular Dynamic Study of Candida Albicans Heat Shock Protein 21, a Potential Target Protein for Antifungal Drug Development
... The construction of model on MOE 2011-12 was carried through following procedure; initially identity of residues was conserved by copying initial partial geometry of target sequence from template through MOE program. ...
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Three epitopic peptides of the simian immunodeficiency virus Nef protein recognized by macaque cytolytic T lymphocytes.
... The epitopic peptides are located in the central region of the protein, and all of them show high homology with peptides of the human immunodeficiency virus type 1 Nef protein recognized[r] ...
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Insilico structure prediction of saer protein from staphylococcus aureus
... SaeR protein with the help of a template which have the sequence identity more ...this protein is important in rational drug ...saeR protein for drug targeting and the results were found to be ...
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Molecular Diagnosis and Characterization of a Geminivirus Causing Leaf Curl Disease of Tomato in Mid Hills of Northern India
... The isolates were collected on the basis of symptoms (reduction in leaf size, curling, interveinal and marginal necrosis, purple discoloration of the abaxial surface of leave, shortening of internodes, development of ...
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Vehicle Detection In Remote Sensing Images
... vehicle detection and localization in parking lots using high resolution UAV ...high detection and classification accuracy more than 86% and still running under the low complexity ...
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Cloning and Bioinformatics Analysis of Rosa rugose S Locus F Box Gene (RrSLF)
... derived protein has a molecular weight of ...Hydrophobicity protein secreted into the ...This protein and the SFB/SLF protein from Rosa- ceae Prunus fruit, including Prunus speciosa , share a ...
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Homology modeling and ligand docking of Mitogen-activated protein kinase-activated protein kinase 5 (MK5)
... The MK5 models were refined using the RefineModel macro of ICM which globally optimizes side chains and anneals the backbone. The macro includes: (1) Monte Carlo fast [39] simulation for sampling of the conformational ...
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