RMSD for Protein without Last 5 Residues
The difficulty of protein structure alignment under the RMSD
... an RMSD within a given ...in protein structure prediction and structural comparison, where the task of comparing very numerous structures is commonly ...
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Sampling the Conformation of Protein Surface Residues for Flexible Protein Docking
... This benchmark includes 124 “cases” in total. In general, a “case” represents a traditional unbound docking pro- blem, including the unbound structures of the receptor and ligand proteins as well as the structure of the ...
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A New Multi-Objective Approach for Molecular Docking Based on RMSD and Binding Energy
... Departament of Computer Sciences, University of M´ alaga, ETSI Inform´ atica, Campus de Teatinos, M´ alaga - 29071, Spain {esteban,mjgarciag,jnieto,antonio,jfam}@lcc.uma.es Abstract. Ligand-protein docking is an ...
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Basic Residues in the Foamy Virus Gag Protein
... Basic residues are almost exclusively represented by arginines indicating positive selective ...Gag protein at arginine-specifying positions and analyzed various aspects of the FV replication ...even ...
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Predicting and Experimentally Validating Hot-spot Residues at Protein-Protein Interfaces
... the protein in each dimension and filled with TIP3P water containing ...the protein backbone to its original position with a force constant of 1000 kJ/nm for ...μs without backbone position restraints ...
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Predicting and Experimentally Validating Hot-spot Residues at Protein-Protein Interfaces
... the protein in each dimension and filled with TIP3P water containing ...the protein backbone to its original position with a force constant of 1000 kJ/nm for ...μs without backbone position restraints ...
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Context-Based Identification of Protein-Protein Interfaces and “Hot-Spot” Residues
... for protein-protein docking, which would profit from a reduced search space based on predicted interface ...hot-spot residues among the predicted interface ...surface residues contains ...
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Importance of Conserved Cysteine Residues in the Coronavirus Envelope Protein
... and protein sorting (16, 41, ...cysteine residues may not be critical as long as at least one palmitoylated residue is ...which residues are palmitoylated at any given time remains to be ...multiple ...
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FastRNABindR: Fast and Accurate Prediction of Protein-RNA Interface Residues
... the run time of our server, by using UR1R instead of UR5R, without sacrificing the predictive performance. To achieve this goal, we used UR1R to generate the PSSM profiles and replaced the single SVMRBF classifier ...
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Role of Redox-Active Relay Residues in Protein Electron Transfer
... Tariq, and Joanne Widom) for insight discussions, keeping the lab up and running, and showing me various protein purification, characterization, and mutagenesis techniques. Some of the experiments that have been ...
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Insect biorefinery: a green approach for conversion of crop residues into biodiesel and protein
... Conclusion This investigation demonstrated the process of biodiesel production from lignocellulose by a multi-insect biore- finery. The multi-insect utilization of lignocellulose com- prises a first-stage YMW ...
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At Last: Communication without Limits
... SUSE LINUX Openexchange Server 4.1 lets you test the new tools without any sur- charge – for as long as you wish. Additional license fees are only incurred if you want more than five users working with the ...
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Discipline Without Punishment—at Last
... Bryant, employee and community relations manager, while disciplinary problems had never been significant in this nonunion facility, it made operational the company [r] ...
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Identification of Contact Residues and Definition of the CAR-Binding Site of Adenovirus Type 5 Fiber Protein
... type 5 (Ad5) fiber knob to the soluble extracellular domains of CAR together (sCAR) and each immunoglobulin (Ig) domain (IgV and IgC2) independently by surface plasmon resonance demonstrated that the IgV domain is ...
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Conservation and relative importance of residues across protein-protein interfaces
... the residues comprising the core to be smaller than those in the ...the protein surface, especially in cases where the surface harbors additional binding ...for residues located in the core, a ...
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Quitting Without Notice Last Paycheck
... your last paycheck on how ...quitting without notice last paycheck hostage or even over time will be made a higher wage? Now than your last paycheck late pay a two bonus agreement or penalty ...
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Supporting information to: Unique Physicochemical. Patterns of Residues in Protein-Protein Interfaces
... Interface residues (with the rim included), on average, have significantly higher iPat values than non-binding surface residues in both the test set (A) and the disordered protei[r] ...
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BLAST-based structural annotation of protein residues using Protein Data Bank
... a protein sequence in FASTA format, as well as several options to adjust the default settings or use advanced ...musculus protein sequence (GI: 6119625), with the exception of the ...
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Predicting protein-protein interface residues using local surface structural similarity
... interface residues. Of particular interest are recent methods for protein interface predic- tion based on the structural similarity between a query protein and proteins with known ...the ...
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Over the last 5 years, the
... the last 5 years, the National Association For Continence (NAFC) has sponsored epidemi- ologic surveys of adults across the United States in order to quantify the prevalence of blad- der control problems in ...
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