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Root-microbiome

Deciphering composition and function of the root microbiome of a legume plant

Deciphering composition and function of the root microbiome of a legume plant

... We then conducted microcosm experiments in which we inoculated Trifolium in the microcosms with bacteria strains isolated from its root microbiome. The goal was not to screen strains or to test specific ...

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Life in earth – the root microbiome to the rescue?

Life in earth – the root microbiome to the rescue?

... whole- microbiome level, for example through the development of suppressive soils or the control of potato scab by irrigation, or alternatively through the stimulation/intro- duction of key biocontrol ...

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Trees, fungi and bacteria: tripartite metatranscriptomics of a root microbiome responding to soil contamination

Trees, fungi and bacteria: tripartite metatranscriptomics of a root microbiome responding to soil contamination

... Division by taxonomy Fungi represented the kingdom with the most diverse genetic response to contamination within the root samples, being the annotation source of the 8252 distinct DE contigs. The paradigm of ...

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Cropping practices manipulate abundance patterns of root and soil microbiome members paving the way to smart farming

Cropping practices manipulate abundance patterns of root and soil microbiome members paving the way to smart farming

... of root and soil compartments could explain the differential responses of soil and root micro- biomes to the cropping ...soil microbiome would exhibit the most pronounced differences in response to ...

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The wild side of plant microbiomes

The wild side of plant microbiomes

... the root microbiome of wild relatives of common bean ...prokaryotic root micro- biome with a reduced abundance of the Bacteroidetes phylum on modern accessions and a concomitant in- crease of members ...

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Huanglongbing impairs the rhizosphere-to-rhizoplane enrichment process of the citrus root-associated microbiome

Huanglongbing impairs the rhizosphere-to-rhizoplane enrichment process of the citrus root-associated microbiome

... causes root decline ...the root-associated micro- ...the microbiome assembly process, particularly the process from the less tightly associated rhizosphere to the rhizoplane component, of the citrus ...

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Involvement of gut microbiome in human health and disease: brief overview, knowledge gaps and research opportunities

Involvement of gut microbiome in human health and disease: brief overview, knowledge gaps and research opportunities

... With diverse microorganisms, the gut microbiome con- tains millions of different genes [19]. Some of them may be acquired from environmental bacteria [10], indicating their metabolic diversity and versatility. ...

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Microbial Eukaryotes: a Missing Link in Gut Microbiome Studies

Microbial Eukaryotes: a Missing Link in Gut Microbiome Studies

... Human Microbiome Project (13) revealed that fungal taxa were detectable in over 98% of samples, with the fungi Saccharomyces, Candida, and Malassezia as the most common genera in healthy North ...early-life ...

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... The human gut microbiome is thought to have a major role in contributing to health and disease. In particular, evidence has arisen regarding the patho- physiology of certain liver diseases and the microbial flora ...

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Microbiome Helper: a Custom and Streamlined Workflow for Microbiome Research

Microbiome Helper: a Custom and Streamlined Workflow for Microbiome Research

... from microbiome samples containing substantial nontarget host DNA ...Earth Microbiome Project recommendations for using a mammalian blocking primer—note that their protocol employs a V9 blocking primer ...

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Microbiome Data Distinguish Patients with Clostridium difficile Infection and Non C  difficile Associated Diarrhea from Healthy Controls

Microbiome Data Distinguish Patients with Clostridium difficile Infection and Non C difficile Associated Diarrhea from Healthy Controls

... and microbiome data. The microbiome was in- corporated into these models using three approaches: diversity indices, community types, and defined bacterial ...the microbiome allowed us to describe the ...

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Impact of Dietary Resistant Starch on the Human Gut Microbiome, Metaproteome, and Metabolome

Impact of Dietary Resistant Starch on the Human Gut Microbiome, Metaproteome, and Metabolome

... The multiomics data are summarized here in one overview model (Fig. 5) to illustrate the main effects of the resistant starch diet on the gut microbiome and functions that they carry out. Although some of the ...

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Signatures of Mucosal Microbiome in Oral Squamous Cell Carcinoma Identified Using a Random Forest Model

<p>Signatures of Mucosal Microbiome in Oral Squamous Cell Carcinoma Identified Using a Random Forest Model</p>

... of microbiome, were not signi fi cantly different between group C and group P (P > ...the microbiome showed no association with age, sex, smoking, alcohol consumption, degree of differ- entiation, or ...

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Dysbiosis of lower respiratory tract microbiome are associated with inflammation and microbial function variety

Dysbiosis of lower respiratory tract microbiome are associated with inflammation and microbial function variety

... ing microbiome dysbiosis or chronic inflammation in ...how microbiome of the lower respiratory tract interacted with host lung, many animal models have been ...established microbiome dysbiosis mouse ...

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Functional Dynamics of the Gut Microbiome in Elderly People during Probiotic Consumption

Functional Dynamics of the Gut Microbiome in Elderly People during Probiotic Consumption

... Functional Dynamics of the Gut Microbiome in Elderly People during Probiotic Consumption Functional Dynamics of the Gut Microbiome in Elderly People during Probiotic Consumption Emiley A Eloe Fadrosh,[.] ...

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The Oral Microbiome

The Oral Microbiome

... oral microbiome once established causes the phenomenon of ‘colonization resistance’, where established microorganisms confer protection from external pathogens by occupying available surfaces and environmental ...

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The microbiome revolution

The microbiome revolution

... gut microbiome was mostly inert and that, with some notable exceptions, it would not affect the foods or medicines we put in our mouths or on our ...the microbiome had much relevance to disease, except in ...

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The Bee Microbiome: Impact on Bee Health and Model for Evolution and Ecology of Host Microbe Interactions

The Bee Microbiome: Impact on Bee Health and Model for Evolution and Ecology of Host Microbe Interactions

... bee microbiome is likely to be a crucial factor affecting host ...bee microbiome on host health are poorly ...the microbiome are ...bee microbiome, and we present challenges associated with ...

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Role of the intestinal microbiome in colorectal cancer surgery outcomes

Role of the intestinal microbiome in colorectal cancer surgery outcomes

... of microbiome diversity on the occurrence of postoperative complications after colorectal cancer surgery is very ...the microbiome and AL [29] and showed that a low mi- crobial diversity and high abundances ...

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A Molecular Level Landscape of Diet Gut Microbiome Interactions: Toward Dietary Interventions Targeting Bacterial Genes

A Molecular Level Landscape of Diet Gut Microbiome Interactions: Toward Dietary Interventions Targeting Bacterial Genes

... Looking into the biological processes mostly affected by the phytochemical-protein interactions, we found that the 115 DE targets were significantly enriched in 11 pathways (FDR P value ⬍ 0.05 by Fisher’s exact test) ...

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