Similarity searches
Effectiveness of retrieval in similarity searches of chemical databases: A review of performance measures
... chemical similarity searches should be ...of searches for bioactive target structures; an example is a study of distance-based measures for 3D similarity searching ...of similarity ...
32
Similarity searches in genome-wide numerical data sets
... The program psi-square derives its name from the widely employed sequence similarity program PSI-BLAST. Like PSI-BLAST, psi-square employs an iterative search strategy: the query gene defines a numerical pattern ...
14
Fast structure similarity searches among protein models: efficient clustering of protein fragments
... the similarity of the models within the ensemble ...the similarity among different predic- tive models was recognized earlier as a significant improvement factor for assessing the quality of a model ...the ...
10
The Viral MetaGenome Annotation Pipeline (VMGAP): An automated tool for the functional annotation of viral Metagenomic shotgun sequencing data
... to similarity searches against protein databases, the VMGAP looks for the presence of HMMs from two databases, PFAM/TIGRFAM (a database of HMMs representing conserved protein domains) and ACLAME-HMMs (a ...
12
Horizontal gene transfer of plant specific leucine rich repeats between plants and bacteria
... quence similarity searches using the amino acid se- quences of all PS-LRRs within the tandem domain as queries in FASTA [31] at the Bioinformatic Center, In- ...
19
Click here to download PDF version of the article !
... on similarity searches like structure analysis and prediction, detection of specific regions, alignments, data mining, 2D PAGE analysis, or protein modeling, respectively, comprehensive databases like the ...
9
Endogenous retroviruses of the chicken genome
... sequence similarity searches, motif identification and evaluation of element features we detected 11 novel ERV families covering more than 21 megabases of previously uncharacterized chicken genome ...
5
A novel RING finger in the C-terminal domain of the coatomer protein α-COP
... sequence-similarity searches with the RING domain of α-COP were not able to retrieve the RING domains of these proteins, based on common domain architectures and similar biological pathways where they ...
6
Widespread Horizontal Gene Transfer from Double-Stranded RNA Viruses to Eukaryotic Nuclear Genomes
... sequence similarity searches in public genome databases for various organisms showed that the capsid protein and RNA-depen- dent RNA polymerase genes from totiviruses and partitiviruses have widespread ...
12
Draft genome sequence of Thermoactinomyces sp. strain AS95 isolated from a Sebkha in Thamelaht, Algeria
... sequence similarity searches by BLASTN against the NCBI-NT database, strain AS95 showed 97 – 99 % sequence similarity to members of the genus ...
6
Multiple search methods for similarity-based virtual screening: analysis of search overlap and precision
... multiple similarity searches using a sin- gle reference structure or in multiple similarity searches using structurally similar multiple reference ...the similarity for a database ...
16
Multiple search methods for similarity-based virtual screening: analysis of search overlap and precision
... multiple similarity searches using a sin- gle reference structure or in multiple similarity searches using structurally similar multiple reference ...the similarity for a database ...
15
Searches for Squarks and Gluinos with ATLAS
... • An alternative approach in the search for SUSY is to look for the production of the sparticles which are expected to be the easiest to find. Due to the nature of SUSY, the superpartners of the Standard Model’s third ...
10
Searches with multilepton final states
... Many searches for SUSY in multilepton final states have been performed at LHC with data at 8 TeV; no excess beyond Standard Model expectation is observed. Stringent constraints on masses of charginos, neutralinos ...
6
SUSY Searches at ATLAS
... out searches for stable massive particles [17], for stopped gluinos [18], for kinked or disappearing tracks [19] and for secondary vertices of decaying massive particles ...
6
Diphoton searches (CMS)
... cay, among others, into diphotons. In 2015, the ATLAS and CMS collaborations could explore a new energy range using proton-proton collisions at a center-of-mass energy of √ s = 13 TeV. Both collabo- rations presented ...
12
Exotic searches at NA62
... NA62 searches for HNL are expected soon from the analysis of the full data set ...other searches for exotic particles are ...complete. Searches for HNL and Dark Photons with visible decays, Dark ...
5
Non-Resonance Searches with Lepton
... Non-resonance searches are a typical example that the LHC took over quickly the all the recent results against the Tevatron due to the beam energy gaining an order of mag- nitude in resolution power for ...
6
Semantic Searches
... ESI searches begins at the “dawn of the information age,” 37 with United States ...in searches of intermingled records, it was unavoidable (and therefore permissible) to examine “some innocuous documents ...
43
HT1 204 pdf
... Phase 2 Observations Most SEP-infected searches were “Misc” Lots of non-English searches Many “specific site” searches are for videos Many “specific app” searches looking for war[r] ...
43