Stable isotope probing (SIP)
Targeted metagenomics of active microbial populations with stable-isotope probing
... Combining stable-isotope probing (SIP) with metagenomics provides access to genomes from microorganisms involved in metabolic processes of ...
20
Stable isotope probing of salicylate-degrading bacteria in polycyclic aromatic hydrocarbon-contaminated soil
... Padmanabhan et al. 2003; DeRito et al. 2005). Stable-isotope probing does have a number of limitations. One major consideration is the availability of 13 C-labeled substrates. Uniform labeling is ...
149
Genome-Resolved Proteomic Stable Isotope Probing of Soil Microbial Communities Using 13CO2 and 13C-Methanol.
... States Stable isotope probing (SIP) enables tracking the nutrient flows from isotopically labeled substrates to specific microorganisms in microbial ...
15
Illuminating Microbial Contributions To Soil Carbon Cycling Dynamics Using High Resolution Stable Isotope Probing
... We describe a high-‐resolution approach for identifying microbial contributions to soil carbon cycling dynamics using nucleic acid stable isotope probing coupled with next generation sequencing, ...
248
Consuming algal products: trophic interactions of bacteria and a diatom species determined by RNA stable isotope probing
... is stable isotope probing (SIP) which allows an identification of active microorganisms using particular growth ...by isotope arrays coupled with fingerprinting ...
5
Proteomic Stable Isotope Probing Reveals Taxonomically Distinct Patterns in Amino Acid Assimilation by Coastal Marine Bacterioplankton
... DNA stable isotope probing (DNA-SIP), applies metagenomic approaches to whole- community DNA that is separated based on differences in density due to isotopic label incorporation into newly ...
16
Novel Isoprene-Degrading Proteobacteria From Soil and Leaves Identified by Cultivation and Metagenomics Analysis of Stable Isotope Probing Experiments
... DNA stable isotope probing (DNA-SIP) with 13 C-labeled isoprene was used to identify active isoprene degraders associated with soil in the vicinity of a willow ...
13
Identifying low pH active and lactate-utilizing taxa within oral microbiome communities from healthy children using stable isotope probing techniques.
... based Stable Isotope Probing (SIP) to oral plaque communities from healthy children for in vitro temporal monitoring of metabolites and identification of metabolically active and inactive bacterial ...
13
Microbial community functioning at hypoxic sediments revealed by targeted metagenomics and RNA stable isotope probing
... Identification of microbial communities by RNA stable isotope probing and 16S rRNA sequencing from the Benguela coastal upwelling system (Chapter 4).. Christina Pavloudi, Sa[r] ...
235
Stable-isotope probing-based investigations of polycyclic aromatic hydrocarbon-degrading bacteria in contaminated soil
... 129. Zhou HW, Luan TG, Zou F, Tam NFY. Different bacterial groups for biodegradation of three- and four-ring PAHs isolated from a Hong Kong mangrove sediment. J Haz Mat (2008) 152: 1179-1185. 130. Huang WE, Ferguson A, ...
134
Linking Uncultivated Microbial Populations and Benthic Carbon Turnover by Using Quantitative Stable Isotope Probing
... quantitative stable isotope probing (qSIP) (14) We also tested the hypothesis put forward in genome-centric studies (13, 15) that low-abundance taxa play an active role in benthic carbon ...
15
Combining metagenomics with metaproteomics and stable isotope probing reveals metabolic pathways used by a naturally occurring marine methylotroph
... (2015) Combining metagenomics with metaproteomics and stable isotope probing reveals metabolic pathways used by a naturally occurring marine methylotroph.. Permanent WRAP URL:.[r] ...
26
Effect of incubation conditions on the enrichment of pyrene-degrading bacteria identified by stable isotope probing in a PAH-contaminated soil
... CHAPTER FOUR DISCUSSION AND CONCLUSIONS Slurry bioreactors are commonly used for ex situ biological treatment of PAH contaminated soil, but in situ treatment methods are much less costly. The goal of this study was to ...
55
Novel bacteria capable of degrading phenanthrene in activated sludge revealed by stable isotope probing coupled with high throughput sequencing
... Hu QW, Chu X, Xiao M, Li CT, Yan ZF, Hozzein WN, Kim CJ, Zhi XY, Li WJ (2016) Arthrobacter deserti sp. nov., isolated from a desert soil sample. Int J Syst Evol Microbiol 66:2035-2040 Jameson E, Taubert M, Coyotzi S, ...
29
Assessing the effect of organic residue quality on active decomposing fungi in a tropical Vertisol using 15N DNA stable isotope probing
... Article Title: Assessing the effect of organic residue quality on active decomposing fungi in a tropical Vertisol using 15N-DNA stable isotope probing.. Year of publication: 2011.[r] ...
13
Critical review on unraveling uncultivable pesticide degraders via stable isotope probing (SIP)
... La imagen apologética favorable a la dinastía reinante enfatiza el fundamento básico de la propaganda pro-Trastámara posterior a la guerra civil: “El reinado de P[r] ...
32
Stable isotope probing and metagenomics highlight the effect of plants on uncultured phenanthrene-degrading bacterial consortium in polluted soil
... metagenomes from planted soil showed that ryegrass rhizosphere selected for an active 444. population with specific functions compared to bare soil, i.e[r] ...
37
Characterization of para nitrophenol degrading bacterial communities in river water using functional markers and stable isotope probing
... (approx 384 bp) from DNA extracted from river water at T 0 and after complete PNP biodegradation, as well as in the PNP-degrading isolate Pseudomonas syringae isolates, [r] ...
31
Stable Isotope Studies of Fuel Oxygenate Biodegradation.
... of stable isotope probing is that these approaches can detect organisms that are not primarily responsible for metabolism of the isotopically-labeled test substrate but have assimilated labeled ...
206
Probing the Metabolic Phenotype of Breast Cancer Cells by Multiple Tracer Stable Isotope Resolved Metabolomics
... multiple stable isotope tracers and SIRM to compare the fates of different carbon sources for lipid and central metabolism in estrogen-sensitive breast cancer cells, a triple negative breast cancer cell, ...
35