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Transcription Start Sites (TSS)

H3K4 tri-methylation breadth at transcription start sites impacts the transcriptome of systemic lupus erythematosus

H3K4 tri-methylation breadth at transcription start sites impacts the transcriptome of systemic lupus erythematosus

... gene transcription [1]. It is mostly found around transcription start sites (TSS) and strongly associated with active transcription [2, ...of transcription regula- tion, a topic ...

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Identification of Novel Transcription Start Sites and Distinct Proximal Promoter Regions for 
Pregnane X Receptor (PXR) Isoforms 
PXR 1 and PXR 2

Identification of Novel Transcription Start Sites and Distinct Proximal Promoter Regions for Pregnane X Receptor (PXR) Isoforms PXR 1 and PXR 2

... Based on these observations, the objectives of this research were to fully characterize the unique 5’ regions of each PXR 1 and PXR 2 transcript and identify their distinct promoter regions. The majority of available ...

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Conservation of Transcription Start Sites within Genes across a Bacterial Genus

Conservation of Transcription Start Sites within Genes across a Bacterial Genus

... ABSTRACT Transcription start sites (TSSs) lying inside annotated genes, on the same or opposite strand, have been observed in diverse bacteria, but the function of these unexpected transcripts is ...

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Mapping of Betapapillomavirus Human Papillomavirus 5 Transcription and Characterization of Viral-Genome Replication Function

Mapping of Betapapillomavirus Human Papillomavirus 5 Transcription and Characterization of Viral-Genome Replication Function

... HPV5 transcription in U2OS ...cleavage sites (CSs) using ...4 Transcription start site (TSS) usage in the E1 promoter region during transient HPV5 replication in U2OS and U2OS subclone ...

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Extended Region of Nodulation Genes in Rhizobium meliloti 1021. II. Nucleotide Sequence, Transcription Start Sites and Protein Products

Extended Region of Nodulation Genes in Rhizobium meliloti 1021. II. Nucleotide Sequence, Transcription Start Sites and Protein Products

... 1987 Transcription of Rhizobium meliloti nodulation genes: identification o f a nodD transcription initiation site in vitro and. in Vivo[r] ...

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Histone H3.5 forms an unstable nucleosome and accumulates around transcription start sites in human testis

Histone H3.5 forms an unstable nucleosome and accumulates around transcription start sites in human testis

... the transcription of the genes required during the early stages of spermato- ...regulating transcription during spermatogenesis, as its incorporation is correlated with the gene expression ...

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Large-Scale Molecular Characterization of Adeno-Associated Virus Vector Integration in Mouse Liver

Large-Scale Molecular Characterization of Adeno-Associated Virus Vector Integration in Mouse Liver

... tion sites, which had been considered rare in our previous study (22), were found to be relatively ...the transcription start sites and upstream of the coding sequences of cancer-related ...

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Activation of Zoosporogenesis-Specific Genes in Phytophthora infestans Involves a 7-Nucleotide Promoter Motif and Cold-Induced Membrane Rigidity

Activation of Zoosporogenesis-Specific Genes in Phytophthora infestans Involves a 7-Nucleotide Promoter Motif and Cold-Induced Membrane Rigidity

... PinifC3 transcription to an 86-nt ...the transcription start site, but not one with the promoter fragment truncated to ⫺ 65, produced GUS enzyme in cleaving sporangia ...translational start ...

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Triaging informative cis regulatory elements for the combinatorial control of temporal gene expression during Plasmodium falciparum intraerythrocytic development

Triaging informative cis regulatory elements for the combinatorial control of temporal gene expression during Plasmodium falciparum intraerythrocytic development

... specific transcription factor biding to cis -regulatory DNA motifs, fell out of favour in the early 2000′s due to the apparent absence of transcription factors in the ...specific transcription ...

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Integration Site Preference of Xenotropic Murine Leukemia Virus-Related Virus, a New Human Retrovirus Associated with Prostate Cancer

Integration Site Preference of Xenotropic Murine Leukemia Virus-Related Virus, a New Human Retrovirus Associated with Prostate Cancer

... integration sites also showed a preference for transcription start sites, CpG islands, and DNase-hypersensitive ...integration sites in tumors are commonly found within cancer ...

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The TAGteam DNA motif controls the timing of Drosophila
pre blastoderm transcription

The TAGteam DNA motif controls the timing of Drosophila pre blastoderm transcription

... By counting X-chromosomes in nuclear cycle 12, embryos engage their dosage compensation machinery in time to avoid an imbalance in X-linked gene products that would otherwise arise between the sexes during cycle 14 when ...

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Distinguishing epigenetic marks of developmental and imprinting regulation

Distinguishing epigenetic marks of developmental and imprinting regulation

... Many studies of specific loci have described differential enrichment of particular histone modifications between the two parental chromosomes at some ICRs and imprinted gene promoters or transcription start ...

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24-Hour Rhythms of DNA Methylation and Their Relation with Rhythms of RNA Expression in the Human Dorsolateral Prefrontal Cortex

24-Hour Rhythms of DNA Methylation and Their Relation with Rhythms of RNA Expression in the Human Dorsolateral Prefrontal Cortex

... methylation sites throughout the genome by considering methylation levels as a function of clock time of death and parameterizing these data using cosine ...near transcription start sites were ...

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TOP1α regulates FLOWERING LOCUS C expression by coupling histone modification and transcription machinery

TOP1α regulates FLOWERING LOCUS C expression by coupling histone modification and transcription machinery

... Histone modifications, such as H3K4me and H3K36me, are major regulators of chromatin structure at the FLC locus and are essential for maintaining high levels of FLC transcription (He et al., 2004; Kim et al., ...

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Transactivation of the cytomegalovirus ICP36 gene promoter requires the alpha gene product TRS1 in addition to IE1 and IE2.

Transactivation of the cytomegalovirus ICP36 gene promoter requires the alpha gene product TRS1 in addition to IE1 and IE2.

... The ICP36 promoter region in pON269 contains three TATA elements and three transcription start sites that are activated differentially during infection such that start sites 1 and 3 are [r] ...

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Structure and expression of hybrid dysgenesis-induced alleles of the ovarian tumor (otu) gene in Drosophila melanogaster.

Structure and expression of hybrid dysgenesis-induced alleles of the ovarian tumor (otu) gene in Drosophila melanogaster.

... Sequence analysis of the otuP alleles revealed that the P element insertion sites are clustered within a region upstream of the major transcription start sites and down[r] ...

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Gene Structure and Expression of Kaposi's Sarcoma-Associated Herpesvirus ORF56, ORF57, ORF58, and ORF59

Gene Structure and Expression of Kaposi's Sarcoma-Associated Herpesvirus ORF56, ORF57, ORF58, and ORF59

... the start and termination codons in the KSHV genome (GenBank accession number U75698) ...their transcription start sites) and 3 ⬘ -end processing signals [a poly(A) signal and a cleavage site ...

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Ex Vivo and In Vitro Identification of a Consensus Promoter for VSG Genes Expressed by Metacyclic-Stage Trypanosomes in the Tsetse Fly

Ex Vivo and In Vitro Identification of a Consensus Promoter for VSG Genes Expressed by Metacyclic-Stage Trypanosomes in the Tsetse Fly

... (1). Transcription start sites for these MVAT4 and MVAT7 genes were mapped to elements referred to as putative MVAT promoters that varied between 67 and 73 bp in length and that were able to drive ...

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Genome-wide analysis reveals a role for TDG in estrogen receptor-mediated enhancer RNA transcription and 3-dimensional reorganization

Genome-wide analysis reveals a role for TDG in estrogen receptor-mediated enhancer RNA transcription and 3-dimensional reorganization

... nascent transcription in response to E2 treatment in MCF7 cells and showed that many of the ERα bound enhancers bind RNA pol II and transcribe enhancer RNAs (eRNA) ...eRNA transcription, we first looked too ...

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Variable structure motifs for transcription factor binding sites

Variable structure motifs for transcription factor binding sites

... ClustalW2 [50] release 2.0.10 was used to realign the sequences used with TRANSFAC, version 2008.3, [10] to determine the PWMs. The gap extension penalty was reduced to 7 from the default of 15, the gap extension to 3 ...

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