Typing data
Fast phylogenetic inference from typing data
... The problem solved by goeBURST can be stated as a graphic matroid optimization problem and, hence, it follows a classic greedy approach [22]. Given the maximum Hamming distance k, we can define a graph G = (V , E ) , ...
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Intraclass and interclass correlations of allele sizes within and between loci in DNA typing data.
... One might argue that the demonstration of the lack o f significant correlations in individuals’ VNTR frag- ment sizes does not necessarily ensure the validity of the forensi[r] ...
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Estimating Recombinational Parameters in Streptococcus pneumoniae From Multilocus Sequence Typing Data
... lin-resistant isolates recovered from hospitals in Taiwan (Shi one of the seven housekeeping loci (Feil et al. 1999). et al. 1998), and 66 isolates of the major Spanish penicillin- The nucleotide sequence differences ...
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Comparison of Rapid, Automated Ribotyping and DNA Macrorestriction Analysis of Burkholderia pseudomallei
... In conclusion, this comparison of automated ribotyping with DNA macrorestriction showed that an EcoRI ribotyping pro- tocol can be used to obtain discriminating molecular typing data on all isolates ...
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Typing multidrug resistant Staphylococcus aureus: conflicting epidemiological data produced by genotypic and phenotypic methods clarified by phylogenetic analysis
... two typing methods as we have done, particularly when the isolates come from within one institution (8, ...phage typing may provide useful, relatively stable typing data as variants of a ...
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Multilocus analysis for gene-centromere mapping using first polar bodies and secondary oocytes.
... A method for multilocus analysis of PB1 and SO typing data would permit simultaneous mapping of multiple genes relative to the centromere and the iden- tification and [r] ...
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Ion Torrent Personal Genome Machine Sequencing for Genomic Typing of Neisseria meningitidis for Rapid Determination of Multiple Layers of Typing Information
... the data with our previous conventional typing results (12) and, in addition, to as- sess the multitude of typing information retrievable by the novel sequencing ...extended typing beyond the ...
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Open password system with press time and inner time
... SplashID is a multi-platform password manager. Available on the desktop for Windows and Mac OS X it also syncs to mobile versions on the iPhone, Android, Blackberry, Palm OS, Windows Mobile, and S60 platforms. SplashID ...
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Multiplex Strategy for Multilocus Sequence Typing, fla Typing, and Genetic Determination of Antimicrobial Resistance of Campylobacter jejuni and Campylobacter coli Isolates Collected in Switzerland
... sequence data could be generated by this ...for typing by PubMLST influence the ST, they might allow further separation of strains belonging to the same ST, thereby increasing the resolution of the ...
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Validation of Binary Typing forStaphylococcus aureus Strains
... binary typing method described herein provides a reproducible, high-resolu- tion molecular typing system strategy that may in the end be preferred over other means of ...binary typing system compared ...
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Typing Behaviour Gives Chinese Word Segmentation New Perspective
... A public notice is posted on the Internet to gather volunteer participants. There are some requirements for the volunteers. First of all, volunteers spend more than 3 hours with computer every day. Second, volunteers use ...
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Role of Real Time Molecular Typing in the Surveillance of Campylobacter Enteritis and Comparison of Pulsed Field Gel Electrophoresis Profiles from Chicken and Human Isolates
... molecular typing study of Campy- lobacter (12) combined with data regarding the dates and lo- cations of isolation of the isolates suggested that 49% of the isolates from the Eastern Townships, Que ´bec, ...
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Comparison of classical multi locus sequence typing software for next generation sequencing data
... capillary data and the NGS MLST software applications, which additionally includes MLST results from the EnteroBase ...sequencing data reported a single different allele. Whilst capillary sequencing ...
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A Successful, Diverse Disease Associated Lineage of Nontypeable Pneumococci That Has Lost the Capsular Biosynthesis Locus
... a data set of 121 untypeable pneumococci from nasopharyngeal swabs and middle ear fluid of Finnish children and demonstrate that 70 of these belong to a pneumococcal lineage which has lost its capsular ...sequence ...
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Semiautomation of Multilocus Sequence Typing for the Characterization of Clinical Isolates of Neisseria meningitidis
... sequence data was automatically read from the Licor sequencer using the integrated image analysis and data collection ...sequence data resulted in a new allele or new combina- tion of alleles, ...
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Genotyping of Methicillin Resistant Staphylococcus aureus Strains from Two Hospitals in Bangalore, South India
... Genotyping data from large international studies have shown that a few clones of MRSA are responsible for the spread of the disease in various parts of the world (4, 8, ...Molecular typing methods have in ...
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Development of a Web Tool for Escherichia coli Subtyping Based on fimH Alleles
... three data sets: one containing Sanger sequences of fimH alleles of 42 ...(WGS) data of 243 third-generation-cephalosporin-resistant ...from data set 2 that were subjected to conventional fimH ...
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Phage Based Typing Scheme for Salmonella enterica Serovar Heidelberg, a Causative Agent of Food Poisonings in Canada
... multiple typing methods when investigating ...more data are gathered, the typing databases for serovar Heidelberg will become more reliable, and outbreaks or other events of public health ...
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MDBS V104 MS FORTRAN Interface Notes Aug1980 pdf
... executable form of in order to enter DDL text that Formally specifies the data base's logical structurm the.. invoke the DDL analyzer by DDL typing: L.[r] ...
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The microbial ecology of Campylobacter jejuni in New Zealand within a spatial temporal framework : a thesis presented in partial fulfilment of requirements for the degree of Doctor of Philosophy in Veterinary Science at Massey University, Manawatu, New Zealand
... phenotypic data, although the phenotypic data is stored as meta-data ...short-read data can be obtained from the Sequence Read Archive (SRA), and assembled genomes can be downloaded from ...
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