[PDF] Top 20 Characterizing the Saltol quantitative trait locus for salinity tolerance in rice

... identified Saltol as the QTL with the highest significance for shoot Na–K ratio with an LOD of ...of Saltol between RM23 and RM140 ...SES tolerance scores or survival, it was assumed that by ... See full document

... single locus control- ling a trait of interest while retaining the essential char- acteristics of the recurrent parent ...target locus (“foreground ...target locus can be minimized ... See full document

... a tolerance index of ...Os01g01689 locus alters an amino acid from Ala to Thr (Supplementary data ...This locus is associated with the abiotic ...and salinity tolerance (Li and Xu 2007) ... See full document

... DNA marker analysis: For RFLP analysis, all probes used in this study were selected from a high-density rice genetic link- age map including 3267 markers (http://rgp.dna.affrc.go.jp/ ... See full document

... of quantitative traits, which is challenging since variation for complex traits is caused by multiple interacting quantitative trait loci (QTL) with small and conditional ... See full document

... incomplete trait data as an alternative method for multi- trait QTL ...single trait in different environments (locations or years), a mixed model allows treating environmental effect as a random and ... See full document

... (Xiong et al. 1999; Yue et al. 2009; Deng et al. 2010; Feng et al. 2010; Li et al. 2010; Deng et al. 2011; Chen et al. 2011; Li et al. 2017); recombinant inbred lines (Uga et al. 2003; Yamamoto et al. 2003; Shen et al. ... See full document

... This article addresses the identification of genetic loci (QTL and elsewhere) that influence nonnormal quantitative traits with focus on experimental crosses. QTL mapping is typically based on the assumption that ... See full document

... Mixed-model analysis: Assume the existence of major QTL Note that instead of permuting the genotypes of RIXs di- and polygenes, all affecting a trait of interest. In aggregate, rectly, we permute the genotypes of ... See full document

... We examine the efficiency of different genotyping and phenotyping strategies in inbred line crosses from an information perspective. This provides a mathematical framework for the statistical aspects of QTL experimental ... See full document

... Salt tolerance associated 14 microsatellite primer pairs based molecular analysis of the normal leaf, controlled callus and salt stressed callus of the six rice cultivars with differential responses to salt ... See full document

... Happily, there are several existing resources (highlighted in Table 1) that facilitate browsing by any investigators whether or not they have expertise in the underlying stat- istical methods. The GeneVar database [27] ... See full document

... the salinity tolerance of rice by using F2/F3 population which derived from the crossed combination between the Chanhtrui (high salinity tolerance) and Khangdan18 (susceptible) ... See full document

... Based on the results of this study and those of Li et al. [8] it seems likely that false QTL are a common feature of composite interval mapping studies that have used Zmapqtl Model 6 of QTL Cartographer. The false posi- ... See full document

... The conventional method of QTL variance analysis maximizes the likelihood function by replacing the missing IBDs by their conditional expectations (the expectation met[r] ... See full document

... map Quantitative Trait Loci for individual glucosinolates within Brassica oleracea mapping ...the quantitative measurements of glucosinolates, an optimized level of glucotropaeolin was used as an ... See full document

... T HERE is much interest in mapping the genetic loci (called quantitative trait loci, QTL) that contrib- ute to variation in a quantitative trait. Once such a QTL has been identified, interest ... See full document

... A genetic map for rat chromosome 2 that includes five candidate genes for blood pressure regulation was constructed in a region containing a quantitative trait locus (QTL) for blood pressure. Two F2 ... See full document

... underlying quantitative traits, for improving the performance and/or productivity of plants and animals and for understanding the genetic ...identifying quantitative trait loci (QTL) has been ... See full document

... of quantitative trait locus (QTL) map- ping and association studies is to find certain genomic regions, or QTL, that have nonnegligible contributions to the distribution of quantitative traits ... See full document