[PDF] Top 20 concatenated dataset consisting of all peptide encoding sequences under Bayesian Inference (BI) and Maximum Likelihood (ML)
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concatenated dataset consisting of all peptide encoding sequences under Bayesian Inference (BI) and Maximum Likelihood (ML)
... the ML tree file were imported into PAUP ...selecting maximum parsimony optimality criterion (parsimony settings; character state optimization: DELTRAN), the logfile option was activated (File: ‘Log Output ... See full document
27
Characterization of the complete mitochondrial genomes of Nematodirus oiratianus and Nematodirus spathiger of small ruminants
... genes encoding proteins, 2 genes encoding rRNA, and 22 genes encoding ...the concatenated amino acid sequence data of all 12 protein-coding genes by Bayesian inference ... See full document
9
Tests of conspecificity for allopatric vectors: Simulium nodosum and Simulium shirakii (Diptera: Simuliidae) in Asia
... nucleotide sequences of the COI, 12S rRNA, 16S rRNA, and 28S rRNA genes were deposited in the NCBI GenBank under accession numbers ...DNA sequences were analysed and edited using ChromasPro ...were ... See full document
6
Tree inference for single cell data
... We first compared SCITE against a simple algorithm for solving the perfect phylogeny problem (i.e. testing whether the data defines a phylogeny, and if it does to construct one [12]). A mutation matrix has a perfect phy- ... See full document
17
Phylogenetic and Morphological Investigation of a Dunaliella Strain Isolated from Yuncheng Salt Lake, China
... In the BI tree obtained using aligned psaB gene sequences (Fig. 4), D. sp. YC01 is sister to D. tertiolecta Butcher (JQ039051). These two strains are placed into a strongly-supported clade ... See full document
7
Maximum Entropy and Bayesian Inference for the Monty Hall Problem
... For Bayesian inference, although the partition of the probability space argument has been elaborated on before, there is a striking lack of analysis on its underlying ...Converting Bayesian ... See full document
10
Phylogeography, Population Dynamics, and Molecular Evolution of European Bat Lyssaviruses
... estimated under the ML model described ...the ML trees estimated ...new ML tree was inferred so that the pairwise distance of each viral isolate (of known geographical location) from the PCA ... See full document
11
DNA Sequence Based Subtyping and Evolutionary Analysis of Selected Salmonella enterica Serotypes
... A concatenated alignment of all seven MLST genes sequenced for 25 isolates was used to test for evidence of reticulate evo- lution ...a concatenated alignment of the fimA, mdh, and manB ... See full document
11
Draft genome sequences of five Calonectria species from Eucalyptus plantations in China, Celoporthe dispersa, Sporothrix phasma and Alectoria sarmentosa
... Nanopore reads were error-corrected using Canu v 1.8 (Koren et al. 2017). The genome was assembled using smartdenovo (Istace et al. 2017), with corrected reads from Canu as input. The assembly was polished using base ... See full document
13
Novel report on six Fusarium species associated with head blight and crown rot of wheat in Basra province, Iraq
... distinct sequences proved the identity of 88 iso- lates out of the total 123 isolates that belong to the genus Fusarium in 9 species ...Seventy-one sequences of these isolates corresponded to the GenBank ... See full document
15
Bayesian Inference Under Shape Constraints.
... natural Bayesian approach to a problem where the underlying function has some shape restriction, is to use a prior on the function complying with the shape constraint, and obtain the corresponding posterior ... See full document
142
On The Comparison Of Methods Of Estimating Variance Components: A Case Of Gudali Beef Cattle
... with all levels of the other factors, without ...across all levels of factor A, each level of factor A will contain different levels of factor B, therefore, levels of B are said to be nested within the ... See full document
11
Generalized quasi maximum likelihood inference for periodic conditionally heteroskedastic models
... The rest of this paper is structured as follows. In Section 2, the general P CH model is brie‡y described and some results that are needed in the subsequent Sections are provided. Then, the GQM LE is de…ned in Section 3 ... See full document
45
Full Genome Characterization of the Culicoides-Borne Marsupial Orbiviruses: Wallal Virus, Mudjinbarry Virus and Warrego Viruses
... (aa) sequences have provided a basis for the grouping and classification of orbivirus ...of all Orbivirus ...in all three conserved proteins (Pol, T2 and T13) with other orbiviruses, consistent with ... See full document
12
Maximum Likelihood Under Response Biased Sampling
... an inference about θ ) only has access to the sample values of X, plus a limited amount of information about the sampling method, in the form of the value ξ of another parameter which, together with the (unknown) ... See full document
21
Maximum likelihood estimation of variance components
... However ML estimates (MLEs) are not perfect either - their main drawback is bias. The simplest example of this is also a very well-known one - that of estimating the single “variance component” a 2 of a N(q, o2) ... See full document
76
Approximate maximum likelihood estimation for population genetic inference
... approximate maximum likelihood estimate is obtained using a stochastic version of the Nelder-Mead ...indirect inference, Creel and Kristensen (2013) propose a simulated maximum indirect ... See full document
22
Seeing the wood for the trees : philosophical aspects of classical, Bayesian and likelihood approaches in statistical inference and some implications for phylogenetic analysis
... a likelihood approach where possible and perhaps a classical statistical approach where not, though this latter with reservations and the hope that the suggestion will become obsolete in the next 130 ... See full document
44
Bioinformatics Analysis the Complete Sequences of Cytochrome b of Takydromus sylvaticus and Modeling the Tertiary Structure of Encoded Protein
... and maximum likelihood (ML) implemented in PAUP* ...with all characters unordered and equally weighted, and using tree bisection reconnec- tion (TBR) ...mum likelihood (ML) ... See full document
7
Complete mitochondrial genomes of the ‘intermediate form’ of Fasciola and Fasciola gigantica, and their comparison with F hepatica
... The sequences of the first and second internal transcribed spacers (ITS-1 and ITS-2 = ITS) of nuclear rDNA have been particularly useful for the specific identification of ... See full document
10
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