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[PDF] Top 20 Dynamic DNA strand displacement circuits

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Dynamic DNA strand displacement circuits

Dynamic DNA strand displacement circuits

... with DNA Strand Displace- ment ...nanoscale. DNA nanotechnology achieves such kinetic control using the unique recognition properties of nucleic ...acids. DNA strand ... See full document

290

Programming dynamic nonlinear biomolecular devices using DNA strand displacement reactions

Programming dynamic nonlinear biomolecular devices using DNA strand displacement reactions

... reaction rates etc. A precise overview on the background theory of CRNs, the computational methodology and DSD mechanism is given in Chapter 2. The underlying DSD mechanism of four chemical reactions, viz., catalysis, ... See full document

125

Powering DNA strand-displacement reactions with a continuous flow reactor. Xinyu Cui, Dominic Scalise & Rebecca Schulman

Powering DNA strand-displacement reactions with a continuous flow reactor. Xinyu Cui, Dominic Scalise & Rebecca Schulman

... other DNA nanotechnology devices, such as DNA origami walkers (Tomov et ...run DNA strand displacement logic ...sustain dynamic reactions, they have several fundamental ... See full document

9

Programming Chemical Kinetics: Engineering Dynamic Reaction Networks with DNA Strand Displacement

Programming Chemical Kinetics: Engineering Dynamic Reaction Networks with DNA Strand Displacement

... of strand displacement neglected a crucial “bump” that arises from volume exclusion between single-stranded DNA overhangs co-localized around a co-axial ...the DNA complexes for the ... See full document

245

Detection of Mycobacterium tuberculosis in respiratory specimens by strand displacement amplification of DNA

Detection of Mycobacterium tuberculosis in respiratory specimens by strand displacement amplification of DNA

... The sample processing method described herein used two successive high-speed washes to remove inhibitors from the NALC sediments. It was found to be simpler than methods that include phenol-chloroform extraction (2, 3, ... See full document

6

Implementing nonlinear feedback controllers using DNA strand displacement reactions

Implementing nonlinear feedback controllers using DNA strand displacement reactions

... control circuits it will be essential to understand the trade- offs between system performance and complexity (particularly in terms of the number of chemical reactions to be imple- mented experimentally), as well ... See full document

14

Implementing nonlinear feedback controllers using DNA strand displacement reactions

Implementing nonlinear feedback controllers using DNA strand displacement reactions

... control circuits it will be essential to understand the trade- offs between system performance and complexity (particularly in terms of the number of chemical reactions to be imple- mented experimentally), as well ... See full document

14

An Image Encryption Algorithm Based on Chaos System and DNA Strand Displacement Model

An Image Encryption Algorithm Based on Chaos System and DNA Strand Displacement Model

... system, DNA strand displacement, XOR ...the DNA strand displacement reaction model to extract the secret key and then encrypt the image with a combination of XOR ... See full document

6

Autographa californica Nuclear Polyhedrosis Virus DNA Polymerase: Measurements of Processivity and Strand Displacement

Autographa californica Nuclear Polyhedrosis Virus DNA Polymerase: Measurements of Processivity and Strand Displacement

... DNApol was purified to homogeneity starting from nuclear extracts prepared from Sf9 cells infected with AcDNApol. SDS-PAGE analysis of 10 mg of protein from the final column revealed a single band of protein with no ... See full document

11

Biologically inspired design of feedback control systems implemented using DNA strand displacement reactions

Biologically inspired design of feedback control systems implemented using DNA strand displacement reactions

... using DNA strand displacement reactions Mathias Foo, Rucha Sawlekar, Vishwesh ...control circuits using enzyme-free, entropy driven DNA strand displacement (DSD) reactions ... See full document

5

Reversible Loading of Nanoscale Elements on a Multicomponent Supramolecular Polymer System by Using DNA Strand Displacement

Reversible Loading of Nanoscale Elements on a Multicomponent Supramolecular Polymer System by Using DNA Strand Displacement

... inherent dynamic character and potential for orthogonal self-assembly. Herein, DNA-grafted squaramide bola-amphi- philes are used in a multicomponent supramolecular polymer system and it is shown that they ... See full document

5

Viral DNA synthesized in vitro by avian retrovirus particles permeabilized with melittin. II. Evidence for a strand displacement mechanism in plus-strand synthesis.

Viral DNA synthesized in vitro by avian retrovirus particles permeabilized with melittin. II. Evidence for a strand displacement mechanism in plus-strand synthesis.

... native in vitro viral DNA migrated in a neutral agarose gel with considerable heterogeneity and a larger apparent size than expected for com-.. plete duplex full-length viral DNA.[r] ... See full document

10

Human Immunodeficiency Virus Type 1 Central DNA Flap: Dynamic Terminal Product of Plus-Strand Displacement DNA Synthesis Catalyzed by Reverse Transcriptase Assisted by Nucleocapsid Protein

Human Immunodeficiency Virus Type 1 Central DNA Flap: Dynamic Terminal Product of Plus-Strand Displacement DNA Synthesis Catalyzed by Reverse Transcriptase Assisted by Nucleocapsid Protein

... The strong pausing at ter0, ter1, and ter2 within the CTS site, characterized previously (6, 28), was observed in both situations: normal DNA synthesis compared to SD synthesis. These sites represent the strongest ... See full document

13

Efficient initiation and strand transfer of polypurine tract-primed plus-strand DNA prevent strand transfer of internally initiated plus-strand DNA.

Efficient initiation and strand transfer of polypurine tract-primed plus-strand DNA prevent strand transfer of internally initiated plus-strand DNA.

... in DNA samples digested with NcoI plus NotI. When DNA samples were digested with NcoI alone, only the ...that DNA initiated from the 5 9 PPT was rarely if ever used for strand ...of DNA ... See full document

8

Make a model DNA strand

Make a model DNA strand

... the DNA strand are made up of deoxyribose (a sugar) and phosphoric ...the DNA strand are made up of organic ...up DNA are Adenine, Thymine, Cytosine, and ...a DNA strand ... See full document

7

The evolution of strand preference in simulated RNA replicators with strand displacement: Implications for the origin of transcription

The evolution of strand preference in simulated RNA replicators with strand displacement: Implications for the origin of transcription

... of strand preference can be a non-monotonic function of the intensity of ...double strand production from single-stranded tem- plates; k SP ≠ k SM ...correlated strand preference in strand ... See full document

22

KINETIC CONTROL OF NUCLEIC ACID STRAND DISPLACEMENT REACTIONS

KINETIC CONTROL OF NUCLEIC ACID STRAND DISPLACEMENT REACTIONS

... amplification circuits for computation, diagnostic, and therapeutic ...amplification circuits increase the signal-to-noise ratio of target nucleic acids in the absence of enzymes and thermal ...mediated ... See full document

134

Variable Displacement Pump A10VSO for open circuits

Variable Displacement Pump A10VSO for open circuits

... q max N 1200 1500 1900 2300 2800 1 ) These values are valid for an absolute pressure of 1 bar at the suction port S. By reducing the displacement or increasing the input pressure the speed can be increased as ... See full document

40

Probabilistic switching circuits in DNA

Probabilistic switching circuits in DNA

... switching circuits, using DNA strand displacement ...unbiased DNA switch: An input signal strand binds to the switch and releases an output signal strand with probability ... See full document

6

3′ to 5′ Exonuclease Activity of Herpes Simplex Virus Type 1 DNA Polymerase Modulates Its Strand Displacement Activity

3′ to 5′ Exonuclease Activity of Herpes Simplex Virus Type 1 DNA Polymerase Modulates Its Strand Displacement Activity

... to strand displacement synthesis through 2 nt was observed for both the catalytic subunit and the pol/UL42 com- plex, but significant accumulation of products greater than 82 nt in length did not occur with ... See full document

7

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