[PDF] Top 20 Inference of Population Structure Using Multilocus Genotype Data
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Inference of Population Structure Using Multilocus Genotype Data
... simulated data: For each model, we dure provides a quantitatively accurate estimate of the ran a series of independent runs of the Gibbs sampler posterior distribution of ...runs data, with the main ... See full document
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Inference of Population Structure Using Multilocus Genotype Data: Linked Loci and Correlated Allele Frequencies
... inferring population structure from multilocus genotype ...(2) inference of the population of origin of chromosomal regions, and (3) more accurate estimates of statistical ... See full document
22
A Novel and Fast Approach for Population Structure Inference Using Kernel-PCA and Optimization
... ABSTRACT Population structure is a confounding factor in genome-wide association studies, increasing the rate of false positive ...and STRUCTURE have been ...larger data. Here we present a ... See full document
17
Combining Markers into Haplotypes Can Improve Population Structure Inference
... inferring population structure ...revealing population structure, which point at somewhat different inference of population structure for SNPs and haplotypes (Jakobsson et ... See full document
16
A non-parametric approach to population structure inference using multilocus genotypes
... of population structure from genetic markers is helpful in diverse situations, such as association and evolutionary ...inferring population structure using multilocus ... See full document
12
Inference and Analysis of Population Structure Using Genetic Data and Network Theory
... observed data, assuming that they are randomly drawn from a predefined model of the population, ...for inference about population structure, mostly with implementation of Bayesian ... See full document
28
fastSTRUCTURE: Variational Inference of Population Structure in Large SNP Data Sets
... estimating population structure from genetic data are now used in a wide variety of applications in population ...inferring population structure in large modern data sets ... See full document
21
Bayesian Inference of Recent Migration Rates Using Multilocus Genotypes
... frequencies, population inbreeding coefficients, indi- either high migration rate (m ⫽ ...of population dynamics in nature, the preva- ...microsatellite data sets for plants ...these data sets ... See full document
16
Variogram Analysis of the Spatial Genetic Structure of Continuous Populations Using Multilocus Microsatellite Data
... genetic structure should not specific objectives: (i) to derive a spatial partitioning of be assessed from the value ...without data reduction, ...estimating population genetic parameters and sum- ... See full document
14
Population Structure and Properties of Candida albicans, as Determined by Multilocus Sequence Typing
... A high proportion of the five isolates in clade 5 was resistant to azole antifungal agents, while clades 7 to 11 contained no isolates resistant to any of the three agents tested (Table 2). However, the overall ... See full document
13
Evolution of multilocus genetic structure in an experimental barley population.
... Data from 31 1 selfed families isolated from four generations (Fa, Fls, Fz5, F45) of an experimental barley population were analyzed to determine patterns of chang[r] ... See full document
13
Multilocus Sequence Typing Analysis of Human and Animal Clostridium difficile Isolates of Various Toxigenic Types
... clonal population structure, mutation plays a more important role than recombination in the genomic ...the data set and then on the number of isolates ...MLST data) to examine the effect of ... See full document
9
Evidence of Sexual Recombination among Cryptococcus neoformans Serotype A Isolates in Sub-Saharan Africa
... the population was also evaluated by phylogenetic methods ...site data (15, 39). When all 34 representatives of each multilocus AFLP genotype were in- cluded in this analysis, more then 3,000 ... See full document
7
Inference on Recombination and Block Structure Using Unphased Data
... types are identical. Assume that the genotypes are known, but There has been some work on the related problem not the haplotypes. A double heterozygote, a 2 2 in a row, of inferring recombination from phased data, ... See full document
10
Inferring the Population Structure and Demography of Drosophila ananassae From Multilocus Data
... MATERIALS AND METHODS sequencer (MegaBACE 1000; Amersham Biosciences). Se- quences were edited with SeqMan and aligned with MegAlign Population samples and marker fragment identification: We (DNAStar, Madison, ... See full document
12
Simultaneous Detection of Linkage Disequilibrium and Genetic Differentiation of Subdivided Populations
... genetic structure in subdivided populations. Taking subpopulation structure into account with a hierarchical model, we estimate the magnitude of genetic differentiation and linkage disequilibrium in a ... See full document
12
Multilocus Sequence Typing Scheme for Enterococcus faecalis Reveals Hospital Adapted Genetic Complexes in a Background of High Rates of Recombination
... particular genotype acquires resistance and virulence colonization determinants, dependent on the availability of adaptive mechanisms in the local gene ...epidemic population structure (10, ... See full document
9
Multilocus genotyping reveals high heterogeneity and strong local population structure of the Plasmodium vivax population in the Peruvian Amazon
... San Carlos (population C) is a geographically isolated site with no direct access to the main road and little con- tact with other communities. Bayesian analysis revealed further clustering of population C ... See full document
12
Multilocus Sequence Typing Analysis of Staphylococcus lugdunensis Implies a Clonal Population Structure
... genetic population structure and their relation to patterns of virulence and/or antimicrobial sus- ...ceptibility. Multilocus sequence typing (MLST), which character- izes bacterial multilocus ... See full document
7
My sister's keeper?: genomic research and the identifiability of siblings
... sibling genotype from a trio child genotype can be validated by comparing whether the best estimated genotype, using only the sibling geno- type and population frequencies, matches the ... See full document
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