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[PDF] Top 20 Markov chain Monte Carlo analysis of cholera epidemic

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Markov chain Monte Carlo analysis of cholera epidemic

Markov chain Monte Carlo analysis of cholera epidemic

... [25]. Cholera has short incubation period, from less than one day to five ...of cholera toxin by vibrio cholera bacteria in small intestine and it can cause death within three to four hours if ... See full document

27

Parallel Markov Chain Monte Carlo

Parallel Markov Chain Monte Carlo

... At the Institute for Robotics and Intelligent Systems, Los Angeles, Zhao and Nevatia developed a MCMC approach for segmenting individual humans in a high density scene (such as a crowd) acquired from a static camera ... See full document

209

Markov Chain Monte Carlo to Study the Estimation of the Coefficient of Variation

Markov Chain Monte Carlo to Study the Estimation of the Coefficient of Variation

... The rest of the paper is organized as follows. In Section 2, we dis- cuss the maximum likelihood estimations (MLEs) and the confi- dence intervals of CV . a Parametric bootstrap confidence intervals are discussed in ... See full document

7

Particle Gibbs with Ancestor Sampling

Particle Gibbs with Ancestor Sampling

... hansen, 2011; Del Moral et al., 2006) and Markov chain Monte Carlo (MCMC, see, e.g., Robert and Casella, 2004; Liu, 2001) methods in particular have found application to a wide range of data ... See full document

40

Stability of sequential Markov Chain Monte Carlo methods

Stability of sequential Markov Chain Monte Carlo methods

... Sequential Monte Carlo Samplers are a class of stochastic algorithms for Monte Carlo integral estimation ...of Markov chain Monte Carlo methods and importance ... See full document

10

Stochastic gradient Markov chain Monte Carlo

Stochastic gradient Markov chain Monte Carlo

... data analysis, but the continual growth in the size of the data sets in these fields prevents the use of traditional MCMC ...scalable Monte Carlo algorithms. Broadly speaking, these new Monte ... See full document

31

On Markov chain Monte Carlo methods for tall data

On Markov chain Monte Carlo methods for tall data

... whole dataset. Frequentist or variational Bayes approaches are thus usually preferred to a fully Bayesian analysis in the tall data context on computational grounds. However, they might be difficult to put in ... See full document

43

Uncovering mental representations with Markov chain Monte Carlo

Uncovering mental representations with Markov chain Monte Carlo

... In a large space, randomly selecting trials for typicality judgments will be inefficient when the category regions are small and spread out. This is exactly the situation encoun- tered in Experiment 3. The projection of ... See full document

57

Markov chain Monte Carlo on the GPU

Markov chain Monte Carlo on the GPU

... Markov chain Monte Carlo refers to the concept of using Markov chains for random sam- pling of our state space as a tool for approximating the number of states that we ...Further ... See full document

38

Bayesian Model Selection for Genome-Wide Epistatic Quantitative Trait Loci Analysis

Bayesian Model Selection for Genome-Wide Epistatic Quantitative Trait Loci Analysis

... epistatic analysis results mainly from the number of QTL being unknown and the number of possible epistatic effects being ...efficient Markov chain Monte Carlo (MCMC) algorithm using ... See full document

12

An improved method for estimating the masses of stars with transiting planets

An improved method for estimating the masses of stars with transiting planets

... a Markov-chain Monte Carlo analysis of photometric and spec- troscopic data, using spectroscopically determined temperatures and metallicities as ... See full document

5

On the containment condition for adaptive Markov Chain Monte Carlo algorithms

On the containment condition for adaptive Markov Chain Monte Carlo algorithms

... Markov chain Monte Carlo algorithms are widely used for approximately sampling from com- plicated probability distributions. However, it is often necessary to tune the scaling and other ... See full document

26

Bayesian Inference for PCFGs via Markov Chain Monte Carlo

Bayesian Inference for PCFGs via Markov Chain Monte Carlo

... two Markov chain Monte Carlo (MCMC) algorithms for Bayesian inference of probabilistic con- text free grammars (PCFGs) from ter- minal strings, providing an alternative to maximum-likelihood ... See full document

8

Speculative moves : multithreading Markov Chain Monte Carlo programs

Speculative moves : multithreading Markov Chain Monte Carlo programs

... Although by definition a Markov chain consists of a strictly sequential series of state changes, each MCMC iteration will not necessary result in a state change. In each iteration (see figure 2) a state ... See full document

13

Monte Carlo methods

Monte Carlo methods

... relation function for t ≥ 0 should look like a rapidly decreasing exponential starting at 1 and going to 0, as in Figure 7(b). If not, then one can thin the chain, i.e., keep only one sample every other 10 or ... See full document

21

Metabolic characteristics and genomic epidemiology of Escherichia coli serogroup O145 : a thesis presented in partial fulfilment of the requirements for the degree of Master of Science in Microbiology at Massey University, Palmerston North, New Zealand

Metabolic characteristics and genomic epidemiology of Escherichia coli serogroup O145 : a thesis presented in partial fulfilment of the requirements for the degree of Master of Science in Microbiology at Massey University, Palmerston North, New Zealand

... serogroup O145 strains (n=53) ....................................................... 67 Figure 5.2: Neighbor-Net tree constructed using the presence or absence data from 31 virulence genes identified by the CGE ... See full document

16

Demographic stochasticity in the SDE SIS epidemic model

Demographic stochasticity in the SDE SIS epidemic model

... dimensional Markov process and analysed the behaviour of the model close to quasi- stationarity and the time it took for the system to become extinct with the help of a diffusion ...bivariate Markov ... See full document

29

Skew mixture models for loss distributions: a Bayesian approach

Skew mixture models for loss distributions: a Bayesian approach

... This analysis may provide further insights in the analysis of the loss data where the Gaussian assumption if often violated and more complex distributions have to be taken into ... See full document

18

Particle Filters and Data Assimilation

Particle Filters and Data Assimilation

... State-space models can be used to incorporate subject knowledge on the underlying dynamics of a time series by the introduction of a latent Markov state-process. A user can specify the dynamics of this process ... See full document

31

Accelerating MCMC algorithms

Accelerating MCMC algorithms

... The target of an 0.234 acceptance rate gives good guidance to setting up the ST/PT algorithms in certain settings, but there is a major warning for practitioners following this rule for optimal setup. The assumptions ... See full document

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